myRT

myRT report for GCA_002325725.1_ASM232572v1

Download annotations/find similar RTs

Seq: DCSR01000025.1 TPA_asm: Idiomarina abyssalis isolate UBA1461 UBA1461_contig_1966, whole genome shotgun sequence (79898 bp)
Overview 1 RT 1: 1-7396 bp Neighborhood of RT #1 [1, 7410] COG0610 DUF45 RVT-UG3 RVT-UG8 PRK09692 Feature: gene Location: 1-1845 bp Feature: domain Description: COG0610 Location: 4-1459 bp Feature: domain Description: COG061 0 Location: 4-1 459 bp Feature: gene Location: 1849-2634 bp Feature: domain Description: DUF45 Location: 1978-2605 bp Feature: domain Description: DUF45 Location: 1 978-2605 bp Feature: gene Location: 2662-3840 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2947-3409 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2947-3409 bp Feature: gene Location: 3833-5728 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4331-4769 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4331 -4769 bp Feature: gene Location: 5887-6102 bp Feature: gene Location: 6151-7410 bp Feature: domain Description: PRK09692 Location: 6196-7396 bp Feature: domain Description: PRK09692 Location: 61 96-7396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG3, RVT-UG8, PRK09692 (Integrase; provisional)

Seq: DCSR01000021.1 TPA_asm: Idiomarina abyssalis isolate UBA1461 UBA1461_contig_566, whole genome shotgun sequence (53714 bp)
Overview 1 RT 1: 3477-7613 bp Neighborhood of RT #1 [3477, 7885] LysR PBP2_CysL_like RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 Feature: gene Location: 3477-4148 bp Feature: domain Description: LysR Location: 3483-4026 bp Feature: domain Description: LysR Location: 3483-402 6 bp Feature: gene Location: 4105-4344 bp Feature: domain Description: PBP2_CysL_like Location: 4126-4324 bp Feature: domain Description: PBP2 _CysL_like Location: 412 6-432 4 bp Feature: gene Location: 4430-5701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4643-5264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4643-52 64 bp Feature: domain Description: GIIM Note: maturase Location: 5312-5531 bp Feature: domain Description: GIIM Note: maturase Location: 5312 -5531 bp Feature: gene Location: 5977-6480 bp Feature: gene Location: 6560-7885 bp Feature: domain Description: Nterm_IS4 Location: 6611-6881 bp Feature: domain Description: Nterm_IS4 Location: 6611-6881 bp Feature: domain Description: DDE_Tnp_1 Location: 6935-7613 bp Feature: domain Description: DDE_Tnp_1 Location: 6935-7613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PBP2_CysL_like (cd08420), RVT-GII, GIIM (pfam08388), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609)