myRT

myRT report for GCA_002325835.1_ASM232583v1

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Seq: DCSX01000040.1 TPA_asm: Pseudomonas stutzeri isolate UBA1455 UBA1455_contig_287, whole genome shotgun sequence (48168 bp)
Overview 1 RT 1: 44665-47507 bp Neighborhood of RT #1 [44665, 47507] Avd_like DUF1566 RVT-DGRs Feature: gene Location: 44665-45075 bp Feature: domain Description: Avd_like Location: 44692-44995 bp Feature: domain Description: Avd_like Location: 44692-44995 bp Feature: gene Location: 45029-45331 bp Feature: domain Description: DUF1566 Location: 45221-45326 bp Feature: domain Description: DUF1 566 Location: 45221 -45326 bp Feature: gene Location: 45352-46452 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45532-46219 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45532-4621 9 bp Feature: gene Location: 46453-47079 bp Feature: gene Location: 47076-47507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: DCSX01000056.1 TPA_asm: Pseudomonas stutzeri isolate UBA1455 UBA1455_contig_31, whole genome shotgun sequence (122697 bp)
Overview 1 RT 1: 8841-17145 bp Neighborhood of RT #1 [8841, 17153] COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Feature: gene Location: 8841-9860 bp Feature: domain Description: COG3178 Location: 8853-9843 bp Feature: domain Description: COG3178 Location: 8853-9843 bp Feature: gene Location: 10936-11091 bp Feature: gene Location: 11208-12914 bp Feature: domain Description: RVT_N Location: 11265-11505 bp Feature: domain Description: RVT_N Location: 112 65-11505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11553-12186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11553-12 186 bp Feature: domain Description: GIIM Note: maturase Location: 12240-12474 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 40-12 474 bp Feature: domain Description: HNH Note: nucleases Location: 12726-12858 bp Feature: domain Description: HNH Note: nucleases Location: 12 72 6-12 858 bp Feature: gene Location: 13025-15865 bp Feature: domain Description: LptD Location: 13421-15848 bp Feature: domain Description: LptD Location: 1342 1-15848 bp Feature: gene Location: 15957-17153 bp Feature: domain Description: PRK10770 Location: 15963-17145 bp Feature: domain Description: PRK10770 Location: 15963-17145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: DCSX01000055.1 TPA_asm: Pseudomonas stutzeri isolate UBA1455 UBA1455_contig_33, whole genome shotgun sequence (27627 bp)
Overview 1 RT 1: 4144-10401 bp Neighborhood of RT #1 [4144, 10406] PHA02517 MTES_1575 DUF3320 RVT-GII gyrB Feature: gene Location: 4144-4989 bp Feature: domain Description: PHA02517 Location: 4180-4978 bp Feature: domain Description: PHA02517 Location: 4180-4978 bp Feature: gene Location: 5046-6236 bp Feature: domain Description: MTES_1575 Location: 5208-5499 bp Feature: domain Description: MTES_1575 Location: 5208-5499 bp Feature: domain Description: DUF3320 Location: 5772-5913 bp Feature: domain Description: DUF3 3 20 Location: 5772-5913 bp Feature: gene Location: 6859-7056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6928-7036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6928-703 6 bp Feature: gene Location: 7228-7569 bp Feature: gene Location: 7992-10406 bp Feature: domain Description: gyrB Location: 8001-10401 bp Feature: domain Description: gyrB Location: 8001-10401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-GII, gyrB (TIGR01059)