myRT

myRT report for GCA_002325945.1_ASM232594v1

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Seq: NQYZ01000001.1 Pseudomonas aeruginosa strain W1j NODE_1_length_241191_cov_6.63667, whole genome shotgun sequence (241191 bp)
Overview 1 RT 1: 143953-154258 bp 2 RT 2: 170517-178684 bp Neighborhood of RT #1 [143953, 154260] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [170517, 178698] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 143953-145074 bp Feature: domain Description: COG3177 Location: 143971-145063 bp Feature: domain Description: COG31 77 Location: 1 43971 -1 45063 bp Feature: gene Location: 145333-145469 bp Feature: gene Location: 145797-147482 bp Feature: RT Description: RVT_N Location: 145854-146094 bp Feature: RT Description: RVT_N Location: 1 45854-1 46094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146142-146778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 461 42-1 46778 bp Feature: domain Description: GIIM Note: maturase Location: 146832-147063 bp Feature: domain Description: GIIM Note: maturase Location: 1 46832-1 47063 bp Feature: domain Description: HNH Note: nucleases Location: 147315-147453 bp Feature: domain Description: HNH Note: nucleases Location: 1 4731 5-1 47453 bp Feature: gene Location: 148563-152300 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 148671-149328 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 48671 -1 49328 bp Feature: domain Description: PRK09776 Location: 149541-150012 bp Feature: domain Description: PRK09776 Location: 1 49541 -1 5001 2 bp Feature: domain Description: PAS Location: 150057-150594 bp Feature: domain Description: PAS Location: 1 50057-1 50594 bp Feature: domain Description: PRK10060 Location: 150603-152250 bp Feature: domain Description: PRK1 0060 Location: 1 50603-1 52250 bp Feature: gene Location: 152407-154260 bp Feature: domain Description: PRK05658 Location: 152419-154258 bp Feature: domain Description: PRK05658 Location: 1 5241 9-1 54258 bp Feature: gene Location: 170517-171809 bp Feature: domain Description: PRK10770 Location: 170607-171801 bp Feature: domain Description: PRK1 0770 Location: 1 70607-1 71 801 bp Feature: gene Location: 171790-174564 bp Feature: domain Description: LptD Location: 171985-174550 bp Feature: domain Description: LptD Location: 1 71 985-1 74550 bp Feature: gene Location: 174697-176409 bp Feature: RT Description: RVT_N Location: 174754-174997 bp Feature: RT Description: RVT_N Location: 1 74754-1 74997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175042-175678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75042-1 75678 bp Feature: domain Description: YkfC Location: 175885-176038 bp Feature: domain Description: YkfC Location: 1 75885-1 76038 bp Feature: domain Description: HNH Note: nucleases Location: 176215-176353 bp Feature: domain Description: HNH Note: nucleases Location: 1 7621 5-1 76353 bp Feature: gene Location: 176597-176809 bp Feature: gene Location: 177682-178698 bp Feature: domain Description: COG3178 Location: 177685-178684 bp Feature: domain Description: COG31 78 Location: 1 77685-1 78684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NQYZ01000030.1 Pseudomonas aeruginosa strain W1j NODE_30_length_81723_cov_8.49792, whole genome shotgun sequence (81723 bp)
Overview 1 RT 1: 56893-63704 bp Neighborhood of RT #1 [56893, 64666] KOG0387 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Feature: gene Location: 56893-58119 bp Feature: gene Location: 58443-59687 bp Feature: domain Description: KOG0387 Location: 58467-58593 bp Feature: domain Description: KOG0387 Location: 58467-58593 bp Feature: domain Description: SF2_C_SNF Location: 59151-59523 bp Feature: domain Description: SF2 _C_SNF Location: 59151-5952 3 bp Feature: gene Location: 59770-61488 bp Feature: RT Description: RVT_N Location: 59827-60064 bp Feature: RT Description: RVT_N Location: 5982 7-60064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60115-60766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60115-60766 bp Feature: domain Description: GIIM Note: maturase Location: 60820-61051 bp Feature: domain Description: GIIM Note: maturase Location: 6082 0-61051 bp Feature: domain Description: HNHc Note: nucleases Location: 61285-61441 bp Feature: domain Description: HNHc Note: nucleases Location: 612 85-61441 bp Feature: gene Location: 62106-63110 bp Feature: domain Description: DEXHc_Snf Location: 62298-62544 bp Feature: domain Description: DEXHc_Snf Location: 62 2 98-62 544 bp Feature: gene Location: 63215-64666 bp Feature: domain Description: AdoMet_MTases Location: 63338-63704 bp Feature: domain Description: AdoMet_MTases Location: 63338-63704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919), AdoMet_MTases (cl17173)