myRT

myRT report for GCA_002325965.1_ASM232596v1

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Seq: NQZB01000004.1 Pseudomonas aeruginosa strain W1d NODE_4_length_332183_cov_25.3039, whole genome shotgun sequence (332183 bp)
Overview 1 RT 1: 234971-245277 bp 2 RT 2: 261536-269703 bp Neighborhood of RT #1 [234971, 245279] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [261536, 269717] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 234971-236092 bp Feature: domain Description: COG3177 Location: 234989-236081 bp Feature: domain Description: COG31 77 Location: 234989-236081 bp Feature: gene Location: 236351-236488 bp Feature: gene Location: 236816-238501 bp Feature: RT Description: RVT_N Location: 236873-237113 bp Feature: RT Description: RVT_N Location: 236873-2371 1 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237161-237797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2371 61 -237797 bp Feature: domain Description: GIIM Note: maturase Location: 237851-238082 bp Feature: domain Description: GIIM Note: maturase Location: 237851 -238082 bp Feature: domain Description: HNH Note: nucleases Location: 238334-238472 bp Feature: domain Description: HNH Note: nucleases Location: 238334-238472 bp Feature: gene Location: 239582-243319 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 239690-240347 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 239690-240347 bp Feature: domain Description: PRK09776 Location: 240560-241031 bp Feature: domain Description: PRK09776 Location: 240560-241 031 bp Feature: domain Description: PAS Location: 241103-241613 bp Feature: domain Description: PAS Location: 241 1 03-241 61 3 bp Feature: domain Description: PRK10060 Location: 241622-243269 bp Feature: domain Description: PRK1 0060 Location: 241 622-243269 bp Feature: gene Location: 243426-245279 bp Feature: domain Description: PRK05658 Location: 243438-245277 bp Feature: domain Description: PRK05658 Location: 243438-245277 bp Feature: gene Location: 261536-262828 bp Feature: domain Description: PRK10770 Location: 261626-262820 bp Feature: domain Description: PRK1 0770 Location: 261 626-262820 bp Feature: gene Location: 262809-265583 bp Feature: domain Description: LptD Location: 263004-265569 bp Feature: domain Description: LptD Location: 263004-265569 bp Feature: gene Location: 265716-267428 bp Feature: RT Description: RVT_N Location: 265773-266016 bp Feature: RT Description: RVT_N Location: 265773-26601 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266061-266697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266061 -266697 bp Feature: domain Description: YkfC Location: 266907-267057 bp Feature: domain Description: YkfC Location: 266907-267057 bp Feature: domain Description: HNH Note: nucleases Location: 267234-267372 bp Feature: domain Description: HNH Note: nucleases Location: 267234-267372 bp Feature: gene Location: 267616-267828 bp Feature: gene Location: 268701-269717 bp Feature: domain Description: COG3178 Location: 268704-269703 bp Feature: domain Description: COG31 78 Location: 268704-269703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )