myRT

myRT report for GCA_002326045.1_ASM232604v1

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Seq: NQZF01000012.1 Pseudomonas aeruginosa strain U1o-2 NODE_12_length_202273_cov_43.3986, whole genome shotgun sequence (202273 bp)
Overview 1 RT 1: 158858-165669 bp Neighborhood of RT #1 [158858, 166631] KOG0387 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Feature: gene Location: 158858-160084 bp Feature: gene Location: 160408-161652 bp Feature: domain Description: KOG0387 Location: 160432-160558 bp Feature: domain Description: KOG0387 Location: 1 60432-1 60558 bp Feature: domain Description: SF2_C_SNF Location: 161116-161488 bp Feature: domain Description: SF2_C_SNF Location: 1 61 1 1 6-1 61 488 bp Feature: gene Location: 161735-163453 bp Feature: RT Description: RVT_N Location: 161792-162029 bp Feature: RT Description: RVT_N Location: 1 61 792-1 62029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162080-162731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62080-1 62731 bp Feature: domain Description: GIIM Note: maturase Location: 162785-163016 bp Feature: domain Description: GIIM Note: maturase Location: 1 62785-1 6301 6 bp Feature: domain Description: HNHc Note: nucleases Location: 163250-163406 bp Feature: domain Description: HNHc Note: nucleases Location: 1 63250-1 63406 bp Feature: gene Location: 164071-165075 bp Feature: domain Description: DEXHc_Snf Location: 164263-164509 bp Feature: domain Description: DEXHc_Snf Location: 1 64263-1 64509 bp Feature: gene Location: 165180-166631 bp Feature: domain Description: AdoMet_MTases Location: 165303-165669 bp Feature: domain Description: AdoMet_MTases Location: 1 65303-1 65669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919), AdoMet_MTases (cl17173)

Seq: NQZF01000006.1 Pseudomonas aeruginosa strain U1o-2 NODE_6_length_292495_cov_38.1806, whole genome shotgun sequence (292495 bp)
Overview 1 RT 1: 195257-205562 bp 2 RT 2: 221821-229988 bp Neighborhood of RT #1 [195257, 205564] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [221821, 230002] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 195257-196378 bp Feature: domain Description: COG3177 Location: 195275-196367 bp Feature: domain Description: COG3177 Location: 1952 75-196367 bp Feature: gene Location: 196637-196773 bp Feature: gene Location: 197101-198786 bp Feature: RT Description: RVT_N Location: 197158-197398 bp Feature: RT Description: RVT_N Location: 197158-197398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197446-198082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197446-198082 bp Feature: domain Description: GIIM Note: maturase Location: 198136-198367 bp Feature: domain Description: GIIM Note: maturase Location: 198136-198367 bp Feature: domain Description: HNH Note: nucleases Location: 198619-198757 bp Feature: domain Description: HNH Note: nucleases Location: 198619-198757 bp Feature: gene Location: 199867-203604 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199975-200632 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 199975-2 00632 bp Feature: domain Description: PRK09776 Location: 200845-201316 bp Feature: domain Description: PRK09776 Location: 2 00845-2 01316 bp Feature: domain Description: PAS Location: 201361-201898 bp Feature: domain Description: PAS Location: 2 01361-2 01898 bp Feature: domain Description: PRK10060 Location: 201907-203554 bp Feature: domain Description: PRK10060 Location: 2 01907-2 03554 bp Feature: gene Location: 203711-205564 bp Feature: domain Description: PRK05658 Location: 203723-205562 bp Feature: domain Description: PRK05658 Location: 2 0372 3-2 05562 bp Feature: gene Location: 221821-223113 bp Feature: domain Description: PRK10770 Location: 221911-223105 bp Feature: domain Description: PRK10770 Location: 2 2 1911-2 2 3105 bp Feature: gene Location: 223094-225868 bp Feature: domain Description: LptD Location: 223289-225854 bp Feature: domain Description: LptD Location: 2 2 32 89-2 2 5854 bp Feature: gene Location: 226001-227713 bp Feature: RT Description: RVT_N Location: 226058-226301 bp Feature: RT Description: RVT_N Location: 2 2 6058-2 2 6301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226346-226982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 6346-2 2 6982 bp Feature: domain Description: YkfC Location: 227189-227342 bp Feature: domain Description: YkfC Location: 2 2 7189-2 2 7342 bp Feature: domain Description: HNH Note: nucleases Location: 227519-227657 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 7519-2 2 7657 bp Feature: gene Location: 227901-228113 bp Feature: gene Location: 228986-230002 bp Feature: domain Description: COG3178 Location: 228989-229988 bp Feature: domain Description: COG3178 Location: 2 2 8989-2 2 9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )