myRT

myRT report for GCA_002326055.1_ASM232605v1

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Seq: NQZH01000005.1 Pseudomonas aeruginosa strain U1i NODE_5_length_292492_cov_30.3446, whole genome shotgun sequence (292492 bp)
Overview 1 RT 1: 195254-205559 bp 2 RT 2: 221818-229985 bp Neighborhood of RT #1 [195254, 205561] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [221818, 229999] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 195254-196375 bp Feature: domain Description: COG3177 Location: 195272-196364 bp Feature: domain Description: COG31 77 Location: 1 95272-1 96364 bp Feature: gene Location: 196634-196770 bp Feature: gene Location: 197098-198783 bp Feature: RT Description: RVT_N Location: 197155-197395 bp Feature: RT Description: RVT_N Location: 1 971 55-1 97395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197443-198079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97443-1 98079 bp Feature: domain Description: GIIM Note: maturase Location: 198133-198364 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 33-1 98364 bp Feature: domain Description: HNH Note: nucleases Location: 198616-198754 bp Feature: domain Description: HNH Note: nucleases Location: 1 9861 6-1 98754 bp Feature: gene Location: 199864-203601 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199972-200629 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99972-200629 bp Feature: domain Description: PRK09776 Location: 200842-201313 bp Feature: domain Description: PRK09776 Location: 200842-201 31 3 bp Feature: domain Description: PAS Location: 201358-201895 bp Feature: domain Description: PAS Location: 201 358-201 895 bp Feature: domain Description: PRK10060 Location: 201904-203551 bp Feature: domain Description: PRK1 0060 Location: 201 904-203551 bp Feature: gene Location: 203708-205561 bp Feature: domain Description: PRK05658 Location: 203720-205559 bp Feature: domain Description: PRK05658 Location: 203720-205559 bp Feature: gene Location: 221818-223110 bp Feature: domain Description: PRK10770 Location: 221908-223102 bp Feature: domain Description: PRK1 0770 Location: 221 908-2231 02 bp Feature: gene Location: 223091-225865 bp Feature: domain Description: LptD Location: 223286-225851 bp Feature: domain Description: LptD Location: 223286-225851 bp Feature: gene Location: 225998-227710 bp Feature: RT Description: RVT_N Location: 226055-226298 bp Feature: RT Description: RVT_N Location: 226055-226298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226343-226979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226343-226979 bp Feature: domain Description: YkfC Location: 227186-227339 bp Feature: domain Description: YkfC Location: 2271 86-227339 bp Feature: domain Description: HNH Note: nucleases Location: 227516-227654 bp Feature: domain Description: HNH Note: nucleases Location: 22751 6-227654 bp Feature: gene Location: 227898-228110 bp Feature: gene Location: 228983-229999 bp Feature: domain Description: COG3178 Location: 228986-229985 bp Feature: domain Description: COG31 78 Location: 228986-229985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NQZH01000004.1 Pseudomonas aeruginosa strain U1i NODE_4_length_361016_cov_32.2886, whole genome shotgun sequence (361016 bp)
Overview 1 RT 1: 35643-43416 bp Neighborhood of RT #1 [35643, 43416] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF Feature: gene Location: 35643-37094 bp Feature: domain Description: AdoMet_MTases Location: 35766-36132 bp Feature: domain Description: AdoMet_MTases Location: 35766-36132 bp Feature: gene Location: 37199-38203 bp Feature: domain Description: DEXHc_Snf Location: 37391-37637 bp Feature: domain Description: DEXHc_Snf Location: 37391-37637 bp Feature: gene Location: 38821-40539 bp Feature: RT Description: RVT_N Location: 38878-39115 bp Feature: RT Description: RVT_N Location: 38878-39115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39166-39817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39166-39817 bp Feature: domain Description: GIIM Note: maturase Location: 39871-40102 bp Feature: domain Description: GIIM Note: maturase Location: 39871-40102 bp Feature: domain Description: HNHc Note: nucleases Location: 40336-40492 bp Feature: domain Description: HNHc Note: nucleases Location: 40336-40492 bp Feature: gene Location: 40622-41866 bp Feature: domain Description: KOG0387 Location: 40646-40772 bp Feature: domain Description: KOG0387 Location: 40646-40772 bp Feature: domain Description: SF2_C_SNF Location: 41330-41702 bp Feature: domain Description: SF2 _C_SNF Location: 41330-41702 bp Feature: gene Location: 42190-43416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793)