myRT

myRT report for GCA_002326165.1_ASM232616v1

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Seq: NQZG01000008.1 Pseudomonas aeruginosa strain U1j-3 NODE_8_length_223770_cov_13.7446, whole genome shotgun sequence (223770 bp)
Overview 1 RT 1: 126588-136896 bp 2 RT 2: 153155-161349 bp Neighborhood of RT #1 [126588, 136898] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [153155, 161363] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 126588-127709 bp Feature: domain Description: COG3177 Location: 126606-127698 bp Feature: domain Description: COG31 77 Location: 1 26606-1 27698 bp Feature: gene Location: 127971-128132 bp Feature: gene Location: 128435-130120 bp Feature: RT Description: RVT_N Location: 128492-128732 bp Feature: RT Description: RVT_N Location: 1 28492-1 28732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128780-129416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28780-1 2941 6 bp Feature: domain Description: GIIM Note: maturase Location: 129470-129701 bp Feature: domain Description: GIIM Note: maturase Location: 1 29470-1 29701 bp Feature: domain Description: HNH Note: nucleases Location: 129953-130091 bp Feature: domain Description: HNH Note: nucleases Location: 1 29953-1 30091 bp Feature: gene Location: 131201-134938 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 131309-131966 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 31 309-1 31 966 bp Feature: domain Description: PRK09776 Location: 132179-132650 bp Feature: domain Description: PRK09776 Location: 1 321 79-1 32650 bp Feature: domain Description: PAS Location: 132695-133232 bp Feature: domain Description: PAS Location: 1 32695-1 33232 bp Feature: domain Description: PRK10060 Location: 133241-134888 bp Feature: domain Description: PRK1 0060 Location: 1 33241 -1 34888 bp Feature: gene Location: 135045-136898 bp Feature: domain Description: PRK05658 Location: 135057-136896 bp Feature: domain Description: PRK05658 Location: 1 35057-1 36896 bp Feature: gene Location: 153155-154447 bp Feature: domain Description: PRK10770 Location: 153245-154439 bp Feature: domain Description: PRK1 0770 Location: 1 53245-1 54439 bp Feature: gene Location: 154428-157229 bp Feature: domain Description: LptD Location: 154623-157215 bp Feature: domain Description: LptD Location: 1 54623-1 5721 5 bp Feature: gene Location: 157362-159074 bp Feature: RT Description: RVT_N Location: 157419-157662 bp Feature: RT Description: RVT_N Location: 1 5741 9-1 57662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157707-158343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57707-1 58343 bp Feature: domain Description: YkfC Location: 158550-158703 bp Feature: domain Description: YkfC Location: 1 58550-1 58703 bp Feature: domain Description: HNH Note: nucleases Location: 158880-159018 bp Feature: domain Description: HNH Note: nucleases Location: 1 58880-1 5901 8 bp Feature: gene Location: 159262-159474 bp Feature: gene Location: 160347-161363 bp Feature: domain Description: COG3178 Location: 160350-161349 bp Feature: domain Description: COG31 78 Location: 1 60350-1 61 349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NQZG01000029.1 Pseudomonas aeruginosa strain U1j-3 NODE_29_length_85184_cov_14.3141, whole genome shotgun sequence (85184 bp)
Overview 1 RT 1: 45858-52668 bp Neighborhood of RT #1 [45858, 52865] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 45858-46685 bp Feature: domain Description: ABC_phnC Location: 45888-46602 bp Feature: domain Description: ABC_phnC Location: 45888-46602 bp Feature: gene Location: 47028-47538 bp Feature: domain Description: DUF772 Location: 47178-47373 bp Feature: domain Description: DUF772 Location: 47178-47373 bp Feature: gene Location: 48058-49326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48271-48928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 71-4892 8 bp Feature: domain Description: GIIM Note: maturase Location: 49006-49228 bp Feature: domain Description: GIIM Note: maturase Location: 49006-492 2 8 bp Feature: gene Location: 49476-49802 bp Feature: gene Location: 51321-52865 bp Feature: domain Description: CHD Location: 51537-51951 bp Feature: domain Description: CHD Location: 51537-51951 bp Feature: domain Description: CHD Location: 52179-52668 bp Feature: domain Description: CHD Location: 52 179-52 668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)