myRT

myRT report for GCA_002326275.1_ASM232627v1

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Seq: NQZQ01000047.1 Pseudomonas aeruginosa strain S1g NODE_47_length_16540_cov_19.1918, whole genome shotgun sequence (16540 bp)
Overview 1 RT 1: 13460-15990 bp Neighborhood of RT #1 [13460, 16274] AAA_21 RVT-Retrons Feature: gene Location: 13460-13726 bp Feature: gene Location: 13990-15315 bp Feature: domain Description: AAA_21 Location: 14071-14734 bp Feature: domain Description: AAA_21 Location: 1 4071 -1 4734 bp Feature: gene Location: 15318-16274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15435-15990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5435-1 5990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons

Seq: NQZQ01000028.1 Pseudomonas aeruginosa strain S1g NODE_28_length_85197_cov_21.8422, whole genome shotgun sequence (85197 bp)
Overview 1 RT 1: 45858-52668 bp Neighborhood of RT #1 [45858, 52865] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 45858-46685 bp Feature: domain Description: ABC_phnC Location: 45888-46602 bp Feature: domain Description: ABC_phnC Location: 45888-46602 bp Feature: gene Location: 47028-47538 bp Feature: domain Description: DUF772 Location: 47178-47373 bp Feature: domain Description: DUF772 Location: 47178-47373 bp Feature: gene Location: 48058-49326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48271-48928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 71-4892 8 bp Feature: domain Description: GIIM Note: maturase Location: 49006-49228 bp Feature: domain Description: GIIM Note: maturase Location: 49006-492 2 8 bp Feature: gene Location: 49476-49802 bp Feature: gene Location: 51321-52865 bp Feature: domain Description: CHD Location: 51537-51951 bp Feature: domain Description: CHD Location: 51537-51951 bp Feature: domain Description: CHD Location: 52179-52668 bp Feature: domain Description: CHD Location: 52 179-52 668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NQZQ01000004.1 Pseudomonas aeruginosa strain S1g NODE_4_length_365484_cov_22.5069, whole genome shotgun sequence (365484 bp)
Overview 1 RT 1: 330033-333707 bp Neighborhood of RT #1 [330033, 333721] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 330033-330236 bp Feature: gene Location: 330541-330954 bp Feature: gene Location: 331360-332469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 331537-332221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 153 7-3 3 2221 bp Feature: gene Location: 332742-333098 bp Feature: domain Description: Avd_like Location: 332769-333072 bp Feature: domain Description: Avd_like Location: 3 3 2769-3 3 3 072 bp Feature: gene Location: 333137-333721 bp Feature: domain Description: DUF1566 Location: 333383-333707 bp Feature: domain Description: DUF1566 Location: 3 3 3 3 83 -3 3 3 707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)