myRT

myRT report for GCA_002326305.1_ASM232630v1

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Seq: NQZR01000024.1 Pseudomonas aeruginosa strain S1e NODE_24_length_85176_cov_19.707, whole genome shotgun sequence (85176 bp)
Overview 1 RT 1: 45840-52650 bp Neighborhood of RT #1 [45840, 52847] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 45840-46667 bp Feature: domain Description: ABC_phnC Location: 45870-46584 bp Feature: domain Description: ABC_phnC Location: 45870-46584 bp Feature: gene Location: 47010-47520 bp Feature: domain Description: DUF772 Location: 47160-47355 bp Feature: domain Description: DUF772 Location: 471 60-47355 bp Feature: gene Location: 48040-49308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48253-48910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48253-4891 0 bp Feature: domain Description: GIIM Note: maturase Location: 48988-49210 bp Feature: domain Description: GIIM Note: maturase Location: 48988-4921 0 bp Feature: gene Location: 49458-49784 bp Feature: gene Location: 51303-52847 bp Feature: domain Description: CHD Location: 51519-51933 bp Feature: domain Description: CHD Location: 51 51 9-51 933 bp Feature: domain Description: CHD Location: 52161-52650 bp Feature: domain Description: CHD Location: 521 61 -52650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NQZR01000001.1 Pseudomonas aeruginosa strain S1e NODE_1_length_496929_cov_19.8444, whole genome shotgun sequence (496929 bp)
Overview 1 RT 1: 461047-464721 bp Neighborhood of RT #1 [461047, 464735] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 461047-461250 bp Feature: gene Location: 461555-461968 bp Feature: gene Location: 462374-463483 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 462551-463235 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 462 551-4632 35 bp Feature: gene Location: 463756-464112 bp Feature: domain Description: Avd_like Location: 463783-464086 bp Feature: domain Description: Avd_like Location: 463783-464086 bp Feature: gene Location: 464151-464735 bp Feature: domain Description: DUF1566 Location: 464397-464721 bp Feature: domain Description: DUF1566 Location: 464397-46472 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NQZR01000049.1 Pseudomonas aeruginosa strain S1e NODE_49_length_16495_cov_17.6489, whole genome shotgun sequence (16495 bp)
Overview 1 RT 1: 13469-15999 bp Neighborhood of RT #1 [13469, 16283] AAA_21 RVT-Retrons Feature: gene Location: 13469-13735 bp Feature: gene Location: 13999-15324 bp Feature: domain Description: AAA_21 Location: 14080-14743 bp Feature: domain Description: AAA_21 Location: 14080-14743 bp Feature: gene Location: 15327-16283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15444-15999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15444-15999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons