myRT

myRT report for GCA_002326435.1_ASM232643v1

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Seq: NRAF01000025.1 Pseudomonas aeruginosa strain env172 NODE_25_length_105410_cov_16.0614, whole genome shotgun sequence (105410 bp)
Overview 1 RT 1: 5588-9663 bp Neighborhood of RT #1 [5588, 9663] DUF3085 RVT-GII GIIM Feature: gene Location: 5588-5953 bp Ori: PBX10559.1 Feature: domain Description: DUF3085 Location: 5654-5924 bp Feature: domain Description: DUF3085 Location: 5654-5924 bp Feature: gene Location: 6019-6816 bp Feature: gene Location: 7156-8526 bp Ori: PBX10561.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7492-8107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7492-81 07 bp Feature: domain Description: GIIM Note: maturase Location: 8164-8380 bp Feature: domain Description: GIIM Note: maturase Location: 81 64-8380 bp Feature: gene Location: 8607-8905 bp Feature: gene Location: 8947-9663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: NRAF01000039.1 Pseudomonas aeruginosa strain env172 NODE_39_length_64458_cov_16.8659, whole genome shotgun sequence (64458 bp)
Overview 1 RT 1: 191-4031 bp Neighborhood of RT #1 [191, 4042] RVT-UG5 nitrilase AlpA COG4127 Feature: gene Location: 191-2680 bp Ori: PBX09461.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 197-632 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 197-632 bp Feature: domain Description: nitrilase Location: 1994-2576 bp Feature: domain Description: nitrilase Location: 1994-2 576 bp Feature: gene Location: 2833-3045 bp Ori: PBX09462.1 Feature: domain Description: AlpA Location: 2836-3007 bp Feature: domain Description: AlpA Location: 2 836-3007 bp Feature: gene Location: 3050-4042 bp Ori: PBX09463.1 Feature: domain Description: COG4127 Location: 3056-4031 bp Feature: domain Description: COG412 7 Location: 3056-4031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), AlpA (COG3311), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )

Seq: NRAF01000015.1 Pseudomonas aeruginosa strain env172 NODE_15_length_143049_cov_17.8752, whole genome shotgun sequence (143049 bp)
Overview 1 RT 1: 64236-72408 bp 2 RT 2: 88673-98969 bp Neighborhood of RT #1 [64236, 72416] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88673, 98980] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 64236-65252 bp Ori: PBX11765.1 Feature: domain Description: COG3178 Location: 64239-65238 bp Feature: domain Description: COG3 178 Location: 6423 9-6523 8 bp Feature: gene Location: 66125-66337 bp Feature: gene Location: 66524-68236 bp Ori: PBX11766.1 Gene: ltrA Feature: domain Description: RVT_N Location: 66581-66824 bp Feature: domain Description: RVT_N Location: 66581-66824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66869-67505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66869-67505 bp Feature: domain Description: YkfC Location: 67715-67865 bp Feature: domain Description: YkfC Location: 67715-67865 bp Feature: domain Description: HNH Note: nucleases Location: 68042-68180 bp Feature: domain Description: HNH Note: nucleases Location: 68042-68180 bp Feature: gene Location: 68369-71143 bp Ori: PBX11767.1 Feature: domain Description: LptD Location: 68564-71129 bp Feature: domain Description: LptD Location: 68564-71129 bp Feature: gene Location: 71124-72416 bp Ori: PBX11768.1 Feature: domain Description: PRK10770 Location: 71214-72408 bp Feature: domain Description: PRK10770 Location: 71214-72408 bp Feature: gene Location: 88673-90526 bp Ori: PBX11786.1 Feature: domain Description: PRK05658 Location: 88685-90524 bp Feature: domain Description: PRK05658 Location: 88685-90524 bp Feature: gene Location: 90633-94370 bp Ori: PBX11787.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 90741-91398 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90741-913 98 bp Feature: domain Description: PRK09776 Location: 91611-92082 bp Feature: domain Description: PRK09776 Location: 91611-92082 bp Feature: domain Description: PAS Location: 92139-92664 bp Feature: domain Description: PAS Location: 9213 9-92664 bp Feature: domain Description: PRK10060 Location: 92676-94320 bp Feature: domain Description: PRK10060 Location: 92676-943 20 bp Feature: gene Location: 95451-97136 bp Ori: PBX11788.1 Gene: ltrA Feature: domain Description: RVT_N Location: 95508-95748 bp Feature: domain Description: RVT_N Location: 95508-95748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95796-96432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95796-9643 2 bp Feature: domain Description: GIIM Note: maturase Location: 96486-96717 bp Feature: domain Description: GIIM Note: maturase Location: 96486-96717 bp Feature: domain Description: HNH Note: nucleases Location: 96969-97107 bp Feature: domain Description: HNH Note: nucleases Location: 96969-97107 bp Feature: gene Location: 97464-97600 bp Feature: gene Location: 97859-98980 bp Ori: PBX11789.1 Feature: domain Description: COG3177 Location: 97877-98969 bp Feature: domain Description: COG3 177 Location: 97877-98969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: NRAF01000119.1 Pseudomonas aeruginosa strain env172 NODE_119_length_2991_cov_44.1079, whole genome shotgun sequence (2991 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Ori: PBX07910.1 Gene: ltrA Feature: domain Description: RVT_N Location: 132-375 bp Feature: domain Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 20-1056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1254 -1359 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NRAF01000124.1 Pseudomonas aeruginosa strain env172 NODE_124_length_2433_cov_47.6951, whole genome shotgun sequence (2433 bp)
Overview 1 RT 1: 633-2304 bp Neighborhood of RT #1 [633, 2351] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 633-2351 bp Ori: PBX07897.1 Gene: ltrA Feature: domain Description: RVT_N Location: 690-927 bp Feature: domain Description: RVT_N Location: 690-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1629 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1914 bp Feature: domain Description: HNHc Note: nucleases Location: 2148-2304 bp Feature: domain Description: HNHc Note: nucleases Location: 2148-2304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)