myRT

myRT report for GCA_002326605.1_ASM232660v1

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Seq: NQZZ01000056.1 Pseudomonas aeruginosa strain env241a NODE_56_length_28577_cov_14.0604, whole genome shotgun sequence (28577 bp)
Overview 1 RT 1: 3235-8584 bp Neighborhood of RT #1 [3235, 8634] INT_Rci_Hp1_C SLATT_5 RVT-UG17 FACL_FadD13-like Feature: gene Location: 3235-4104 bp Ori: PBW71369.1 Feature: domain Description: INT_Rci_Hp1_C Location: 3514-3973 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 351 4-3973 bp Feature: gene Location: 4575-5114 bp Ori: PBW71370.1 Feature: domain Description: SLATT_5 Location: 4581-5079 bp Feature: domain Description: SLATT_5 Location: 4581 -5079 bp Feature: gene Location: 5114-6478 bp Ori: PBW71371.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5342-5945 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 5342-5945 bp Feature: gene Location: 6584-6772 bp Feature: gene Location: 7087-8634 bp Ori: PBW71373.1 Feature: domain Description: FACL_FadD13-like Location: 7114-8584 bp Feature: domain Description: FACL_FadD1 3-like Location: 71 1 4-8584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), SLATT_5 (pfam18160), RVT-UG17, FACL_FadD13-like (cd17631)

Seq: NQZZ01000033.1 Pseudomonas aeruginosa strain env241a NODE_33_length_76093_cov_10.7989, whole genome shotgun sequence (76093 bp)
Overview 1 RT 1: 34615-37784 bp Neighborhood of RT #1 [34615, 37798] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 34615-34992 bp Feature: gene Location: 35027-35332 bp Feature: gene Location: 35437-36546 bp Ori: PBW72428.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35614-36298 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35614-362 98 bp Feature: gene Location: 36819-37175 bp Ori: PBW72429.1 Feature: domain Description: Avd_like Location: 36846-37149 bp Feature: domain Description: Avd_like Location: 36846-37149 bp Feature: gene Location: 37214-37798 bp Ori: PBW72430.1 Feature: domain Description: DUF1566 Location: 37460-37784 bp Feature: domain Description: DUF1566 Location: 37460-37784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NQZZ01000020.1 Pseudomonas aeruginosa strain env241a NODE_20_length_111465_cov_12.7464, whole genome shotgun sequence (111465 bp)
Overview 1 RT 1: 52071-60253 bp 2 RT 2: 76517-86574 bp Neighborhood of RT #1 [52071, 60261] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76517, 86574] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_3 HTH_3 Feature: gene Location: 52071-53087 bp Ori: PBW73582.1 Feature: domain Description: COG3178 Location: 52074-53073 bp Feature: domain Description: COG3 178 Location: 52074-53 073 bp Feature: gene Location: 53960-54172 bp Feature: gene Location: 54360-56072 bp Ori: PBW73583.1 Gene: ltrA Feature: domain Description: RVT_N Location: 54417-54660 bp Feature: domain Description: RVT_N Location: 54417-54660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54705-55341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54705-553 41 bp Feature: domain Description: YkfC Location: 55548-55701 bp Feature: domain Description: YkfC Location: 55548-55701 bp Feature: domain Description: HNH Note: nucleases Location: 55878-56016 bp Feature: domain Description: HNH Note: nucleases Location: 55878-56016 bp Feature: gene Location: 56205-58988 bp Ori: PBW73584.1 Feature: domain Description: LptD Location: 56400-58974 bp Feature: domain Description: LptD Location: 56400-58974 bp Feature: gene Location: 58969-60261 bp Ori: PBW73585.1 Feature: domain Description: PRK10770 Location: 59059-60253 bp Feature: domain Description: PRK10770 Location: 59059-60253 bp Feature: gene Location: 76517-78370 bp Ori: PBW73603.1 Feature: domain Description: PRK05658 Location: 76529-78368 bp Feature: domain Description: PRK05658 Location: 76529-783 68 bp Feature: gene Location: 78477-82205 bp Ori: PBW73604.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 78576-79233 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78576-7923 3 bp Feature: domain Description: PRK09776 Location: 79446-79917 bp Feature: domain Description: PRK09776 Location: 79446-79917 bp Feature: domain Description: PAS Location: 79965-80499 bp Feature: domain Description: PAS Location: 79965-80499 bp Feature: domain Description: PRK10060 Location: 80508-82155 bp Feature: domain Description: PRK10060 Location: 80508-82155 bp Feature: gene Location: 83286-84971 bp Ori: PBW73605.1 Gene: ltrA Feature: domain Description: RVT_N Location: 83343-83583 bp Feature: domain Description: RVT_N Location: 83 3 43 -83 583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83631-84267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 63 1-84267 bp Feature: domain Description: GIIM Note: maturase Location: 84321-84552 bp Feature: domain Description: GIIM Note: maturase Location: 843 21-84552 bp Feature: domain Description: HNH Note: nucleases Location: 84804-84942 bp Feature: domain Description: HNH Note: nucleases Location: 84804-84942 bp Feature: gene Location: 85501-85968 bp Ori: PBW73606.1 Feature: domain Description: HTH_3 Location: 85537-85687 bp Feature: domain Description: HTH_3 Location: 8553 7-85687 bp Feature: domain Description: HTH_3 Location: 85870-85942 bp Feature: domain Description: HTH_3 Location: 85870-85942 bp Feature: gene Location: 86110-86574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HTH_3 (pfam01381)