myRT

myRT report for GCA_002330125.1_ASM233012v1

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Seq: NRFR01000052.1 Pseudomonas aeruginosa strain env396b NODE_52_length_32576_cov_16.4984, whole genome shotgun sequence (32576 bp)
Overview 1 RT 1: 28535-32282 bp Neighborhood of RT #1 [28535, 32386] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 28535-29527 bp Ori: PCA70403.1 Feature: domain Description: COG4127 Location: 28541-29516 bp Feature: domain Description: COG41 27 Location: 28541 -2951 6 bp Feature: gene Location: 29532-29744 bp Ori: PCA70404.1 Feature: domain Description: AlpA Location: 29535-29706 bp Feature: domain Description: AlpA Location: 29535-29706 bp Feature: gene Location: 29897-32386 bp Ori: PCA70405.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30338 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30338 bp Feature: domain Description: nitrilase Location: 31700-32282 bp Feature: domain Description: nitrilase Location: 31 700-32282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: NRFR01000010.1 Pseudomonas aeruginosa strain env396b NODE_10_length_171645_cov_14.6705, whole genome shotgun sequence (171645 bp)
Overview 1 RT 1: 95748-99794 bp Neighborhood of RT #1 [95748, 99823] RVT-GII GIIM DUF3085 Feature: gene Location: 95748-96464 bp Feature: gene Location: 96506-96804 bp Feature: gene Location: 96885-98255 bp Ori: PCA73883.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97221-97836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972 2 1-97836 bp Feature: domain Description: GIIM Note: maturase Location: 97893-98109 bp Feature: domain Description: GIIM Note: maturase Location: 97893-98109 bp Feature: gene Location: 98595-99392 bp Feature: gene Location: 99458-99823 bp Ori: PCA73885.1 Feature: domain Description: DUF3085 Location: 99524-99794 bp Feature: domain Description: DUF3085 Location: 9952 4-99794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3085 (pfam11284)

Seq: NRFR01000095.1 Pseudomonas aeruginosa strain env396b NODE_95_length_2991_cov_38.5828, whole genome shotgun sequence (2991 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Ori: PCA69811.1 Gene: ltrA Feature: domain Description: RVT_N Location: 132-375 bp Feature: domain Description: RVT_N Location: 13 2-3 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1254-13 59 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NRFR01000100.1 Pseudomonas aeruginosa strain env396b NODE_100_length_2421_cov_40.4464, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 618-2289 bp Neighborhood of RT #1 [618, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 618-2336 bp Ori: PCA69800.1 Gene: ltrA Feature: domain Description: RVT_N Location: 675-912 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)