myRT

myRT report for GCA_002330135.1_ASM233013v1

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Seq: NRFT01000027.1 Pseudomonas aeruginosa strain env299 NODE_27_length_84880_cov_14.8278, whole genome shotgun sequence (84880 bp)
Overview 1 RT 1: 47929-51467 bp Neighborhood of RT #1 [47929, 51467] RVT-UG17 SLATT_5 Feature: gene Location: 47929-48354 bp Feature: gene Location: 48371-48841 bp Feature: gene Location: 48883-50247 bp Ori: PCA83505.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 49111-49714 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 491 1 1 -4971 4 bp Feature: gene Location: 50244-50786 bp Ori: PCA83506.1 Feature: domain Description: SLATT_5 Location: 50250-50760 bp Feature: domain Description: SLATT_5 Location: 50250-50760 bp Feature: gene Location: 51147-51467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: NRFT01000007.1 Pseudomonas aeruginosa strain env299 NODE_7_length_282384_cov_16.1729, whole genome shotgun sequence (282384 bp)
Overview 1 RT 1: 197321-207627 bp 2 RT 2: 223890-232071 bp Neighborhood of RT #1 [197321, 207629] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223890, 232085] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 197321-198442 bp Ori: PCA86114.1 Feature: domain Description: COG3177 Location: 197339-198431 bp Feature: domain Description: COG3177 Location: 197339-198431 bp Feature: gene Location: 198701-198838 bp Feature: gene Location: 199166-200851 bp Ori: PCA86116.1 Gene: ltrA Feature: domain Description: RVT_N Location: 199223-199463 bp Feature: domain Description: RVT_N Location: 1992 2 3-199463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199511-200147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199511-2 00147 bp Feature: domain Description: GIIM Note: maturase Location: 200201-200432 bp Feature: domain Description: GIIM Note: maturase Location: 2 002 01-2 00432 bp Feature: domain Description: HNH Note: nucleases Location: 200684-200822 bp Feature: domain Description: HNH Note: nucleases Location: 2 00684-2 0082 2 bp Feature: gene Location: 201932-205669 bp Ori: PCA86117.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 202040-202697 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 02 040-2 02 697 bp Feature: domain Description: PRK09776 Location: 202910-203381 bp Feature: domain Description: PRK09776 Location: 2 02 910-2 03381 bp Feature: domain Description: PAS Location: 203471-203963 bp Feature: domain Description: PAS Location: 2 03471-2 03963 bp Feature: domain Description: PRK10060 Location: 203972-205619 bp Feature: domain Description: PRK10060 Location: 2 03972 -2 05619 bp Feature: gene Location: 205776-207629 bp Ori: PCA86118.1 Feature: domain Description: PRK05658 Location: 205788-207627 bp Feature: domain Description: PRK05658 Location: 2 05788-2 0762 7 bp Feature: gene Location: 223890-225182 bp Ori: PCA86136.1 Feature: domain Description: PRK10770 Location: 223980-225174 bp Feature: domain Description: PRK10770 Location: 2 2 3980-2 2 5174 bp Feature: gene Location: 225163-227952 bp Ori: PCA86137.1 Feature: domain Description: LptD Location: 225358-227938 bp Feature: domain Description: LptD Location: 2 2 5358-2 2 7938 bp Feature: gene Location: 228085-229797 bp Ori: PCA86138.1 Gene: ltrA Feature: domain Description: RVT_N Location: 228142-228385 bp Feature: domain Description: RVT_N Location: 2 2 8142 -2 2 8385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228430-229066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 8430-2 2 9066 bp Feature: domain Description: YkfC Location: 229276-229426 bp Feature: domain Description: YkfC Location: 2 2 92 76-2 2 942 6 bp Feature: domain Description: HNH Note: nucleases Location: 229603-229741 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 9603-2 2 9741 bp Feature: gene Location: 229984-230196 bp Feature: gene Location: 231069-232085 bp Ori: PCA86139.1 Feature: domain Description: COG3178 Location: 231072-232071 bp Feature: domain Description: COG3178 Location: 2 31072 -2 32 071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NRFT01000013.1 Pseudomonas aeruginosa strain env299 NODE_13_length_151707_cov_16.7313, whole genome shotgun sequence (151707 bp)
Overview 1 RT 1: 32343-39267 bp Neighborhood of RT #1 [32343, 39350] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 32343-33887 bp Ori: PCA84909.1 Feature: domain Description: CHD Location: 32559-32973 bp Feature: domain Description: CHD Location: 3 2559-3 2973 bp Feature: domain Description: CHD Location: 33201-33690 bp Feature: domain Description: CHD Location: 3 3 201-3 3 690 bp Feature: gene Location: 35406-35732 bp Feature: gene Location: 35882-37150 bp Ori: PCA84910.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36095-36752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6095-3 6752 bp Feature: domain Description: GIIM Note: maturase Location: 36830-37052 bp Feature: domain Description: GIIM Note: maturase Location: 3 683 0-3 7052 bp Feature: gene Location: 37670-38180 bp Feature: domain Description: DUF772 Location: 37820-38015 bp Feature: domain Description: DUF772 Location: 3 7820-3 8015 bp Feature: gene Location: 38523-39350 bp Ori: PCA84911.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 38553-39267 bp Feature: domain Description: ABC_phnC Location: 3 8553 -3 9267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)