myRT

myRT report for GCA_002330305.1_ASM233030v1

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Seq: NRAS01000023.1 Pseudomonas aeruginosa strain env113a NODE_23_length_111465_cov_14.1249, whole genome shotgun sequence (111465 bp)
Overview 1 RT 1: 24892-34947 bp 2 RT 2: 51205-59381 bp Neighborhood of RT #1 [24892, 34949] HTH_3 HTH_3 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [51205, 59395] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 24892-25356 bp Feature: gene Location: 25498-25965 bp Ori: PBX89235.1 Feature: domain Description: HTH_3 Location: 25534-25684 bp Feature: domain Description: HTH_3 Location: 25534-25684 bp Feature: domain Description: HTH_3 Location: 25867-25939 bp Feature: domain Description: HTH_3 Location: 25867-25939 bp Feature: gene Location: 26495-28180 bp Ori: PBX89236.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26552-26792 bp Feature: domain Description: RVT_N Location: 26552-26792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26840-27476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26840-27476 bp Feature: domain Description: GIIM Note: maturase Location: 27530-27761 bp Feature: domain Description: GIIM Note: maturase Location: 27530-27761 bp Feature: domain Description: HNH Note: nucleases Location: 28013-28151 bp Feature: domain Description: HNH Note: nucleases Location: 2801 3-281 51 bp Feature: gene Location: 29261-32989 bp Ori: PBX89237.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 29360-30017 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 29360-3001 7 bp Feature: domain Description: PRK09776 Location: 30230-30701 bp Feature: domain Description: PRK09776 Location: 30230-30701 bp Feature: domain Description: PAS Location: 30749-31283 bp Feature: domain Description: PAS Location: 30749-31 283 bp Feature: domain Description: PRK10060 Location: 31292-32939 bp Feature: domain Description: PRK1 0060 Location: 31 292-32939 bp Feature: gene Location: 33096-34949 bp Ori: PBX89238.1 Feature: domain Description: PRK05658 Location: 33108-34947 bp Feature: domain Description: PRK05658 Location: 331 08-34947 bp Feature: gene Location: 51205-52497 bp Ori: PBX89256.1 Feature: domain Description: PRK10770 Location: 51295-52489 bp Feature: domain Description: PRK1 0770 Location: 51 295-52489 bp Feature: gene Location: 52478-55261 bp Ori: PBX89257.1 Feature: domain Description: LptD Location: 52673-55247 bp Feature: domain Description: LptD Location: 52673-55247 bp Feature: gene Location: 55394-57106 bp Ori: PBX89258.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55451-55694 bp Feature: domain Description: RVT_N Location: 55451 -55694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55739-56375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55739-56375 bp Feature: domain Description: YkfC Location: 56582-56735 bp Feature: domain Description: YkfC Location: 56582-56735 bp Feature: domain Description: HNH Note: nucleases Location: 56912-57050 bp Feature: domain Description: HNH Note: nucleases Location: 5691 2-57050 bp Feature: gene Location: 57294-57506 bp Feature: gene Location: 58379-59395 bp Ori: PBX89259.1 Feature: domain Description: COG3178 Location: 58382-59381 bp Feature: domain Description: COG31 78 Location: 58382-59381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NRAS01000051.1 Pseudomonas aeruginosa strain env113a NODE_51_length_28588_cov_17.1314, whole genome shotgun sequence (28588 bp)
Overview 1 RT 1: 19944-25212 bp Neighborhood of RT #1 [19944, 25343] FACL_FadD13-like RVT-UG17 SLATT_5 INT_Rci_Hp1_C Feature: gene Location: 19944-21491 bp Ori: PBX87582.1 Feature: domain Description: FACL_FadD13-like Location: 19971-21441 bp Feature: domain Description: FACL_FadD13-like Location: 19971-2 1441 bp Feature: gene Location: 21806-21994 bp Feature: gene Location: 22100-23464 bp Ori: PBX87584.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 22328-22931 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 2 32 8-2 2 931 bp Feature: gene Location: 23464-24003 bp Ori: PBX87585.1 Feature: domain Description: SLATT_5 Location: 23470-23968 bp Feature: domain Description: SLATT_5 Location: 2 3470-2 3968 bp Feature: gene Location: 24474-25343 bp Ori: PBX87586.1 Feature: domain Description: INT_Rci_Hp1_C Location: 24753-25212 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 4753-2 52 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), RVT-UG17, SLATT_5 (pfam18160), INT_Rci_Hp1_C (cd00796)

Seq: NRAS01000022.1 Pseudomonas aeruginosa strain env113a NODE_22_length_117168_cov_12.6057, whole genome shotgun sequence (117168 bp)
Overview 1 RT 1: 38296-41479 bp Neighborhood of RT #1 [38296, 41479] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 38296-38880 bp Ori: PBX89373.1 Feature: domain Description: DUF1566 Location: 38542-38866 bp Feature: domain Description: DUF1566 Location: 3 8542-3 8866 bp Feature: gene Location: 38919-39275 bp Ori: PBX89374.1 Feature: domain Description: Avd_like Location: 38946-39249 bp Feature: domain Description: Avd_like Location: 3 8946-3 9249 bp Feature: gene Location: 39548-40657 bp Ori: PBX89375.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39725-40409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 9725-40409 bp Feature: gene Location: 40762-41067 bp Feature: gene Location: 41102-41479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs