myRT

myRT report for GCA_002330315.1_ASM233031v1

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Seq: NRAT01000064.1 Pseudomonas aeruginosa strain env110a NODE_64_length_12779_cov_10.2747, whole genome shotgun sequence (12779 bp)
Overview 1 RT 1: 121-5554 bp Neighborhood of RT #1 [121, 5589] DUF3800 RVT-UG1 HTH_ARSR AlpA Feature: gene Location: 121-459 bp Ori: PBX93848.1 Feature: domain Description: DUF3800 Location: 139-412 bp Feature: domain Description: DUF3800 Location: 1 39-41 2 bp Feature: gene Location: 456-1535 bp Feature: gene Location: 2110-4455 bp Ori: PBX93850.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2911-3448 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 291 1 -3448 bp Feature: gene Location: 4767-5297 bp Ori: PBX93861.1 Feature: domain Description: HTH_ARSR Location: 4881-5007 bp Feature: domain Description: HTH_ARSR Location: 4881 -5007 bp Feature: gene Location: 5350-5589 bp Ori: PBX93851.1 Feature: domain Description: AlpA Location: 5386-5554 bp Feature: domain Description: AlpA Location: 5386-5554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-UG1, HTH_ARSR (smart00418), AlpA (COG3311)

Seq: NRAT01000029.1 Pseudomonas aeruginosa strain env110a NODE_29_length_103482_cov_8.29383, whole genome shotgun sequence (103482 bp)
Overview 1 RT 1: 44950-53144 bp Neighborhood of RT #1 [44950, 53158] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 44950-46242 bp Ori: PBX95573.1 Feature: domain Description: PRK10770 Location: 45040-46234 bp Feature: domain Description: PRK10770 Location: 45040-462 34 bp Feature: gene Location: 46223-49024 bp Ori: PBX95574.1 Feature: domain Description: LptD Location: 46418-49010 bp Feature: domain Description: LptD Location: 46418-49010 bp Feature: gene Location: 49157-50869 bp Ori: PBX95575.1 Gene: ltrA Feature: domain Description: RVT_N Location: 49214-49457 bp Feature: domain Description: RVT_N Location: 492 14-49457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49502-50138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49502 -50138 bp Feature: domain Description: YkfC Location: 50345-50498 bp Feature: domain Description: YkfC Location: 50345-50498 bp Feature: domain Description: HNH Note: nucleases Location: 50675-50813 bp Feature: domain Description: HNH Note: nucleases Location: 50675-50813 bp Feature: gene Location: 51057-51269 bp Feature: gene Location: 52142-53158 bp Ori: PBX95576.1 Feature: domain Description: COG3178 Location: 52145-53144 bp Feature: domain Description: COG3178 Location: 52 145-53144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NRAT01000018.1 Pseudomonas aeruginosa strain env110a NODE_18_length_132297_cov_8.21965, whole genome shotgun sequence (132297 bp)
Overview 1 RT 1: 27905-37549 bp Neighborhood of RT #1 [27905, 37563] CoxL DUF4354 RVT-Retrons HATPase_c_3 DUF262 COG3472 Feature: gene Location: 27905-30109 bp Ori: PBX96791.1 Feature: domain Description: CoxL Location: 27923-30104 bp Feature: domain Description: CoxL Location: 27923 -3 0104 bp Feature: gene Location: 30604-30984 bp Ori: PBX96792.1 Feature: domain Description: DUF4354 Location: 30607-30973 bp Feature: domain Description: DUF43 54 Location: 3 0607-3 0973 bp Feature: gene Location: 32701-33654 bp Ori: PBX96793.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32812-33406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 2812-3 3 406 bp Feature: gene Location: 33835-35790 bp Ori: PBX96903.1 Feature: domain Description: HATPase_c_3 Location: 33904-34252 bp Feature: domain Description: HATPase_c_3 Location: 3 3 904-3 4252 bp Feature: gene Location: 35899-37563 bp Ori: PBX96794.1 Feature: domain Description: DUF262 Location: 36004-36589 bp Feature: domain Description: DUF262 Location: 3 6004-3 6589 bp Feature: domain Description: COG3472 Location: 36721-37549 bp Feature: domain Description: COG3 472 Location: 3 6721-3 7549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxL (COG1529), DUF4354 (pfam14263), RVT-Retrons, HATPase_c_3 (pfam13589), DUF262 (pfam03235), COG3472 (Uncharacterized protein )

Seq: NRAT01000012.1 Pseudomonas aeruginosa strain env110a NODE_12_length_182173_cov_7.15732, whole genome shotgun sequence (182173 bp)
Overview 1 RT 1: 82572-86647 bp Neighborhood of RT #1 [82572, 86647] DUF3085 RVT-GII GIIM Feature: gene Location: 82572-82937 bp Ori: PBX97756.1 Feature: domain Description: DUF3085 Location: 82638-82908 bp Feature: domain Description: DUF3085 Location: 82638-82908 bp Feature: gene Location: 83003-83800 bp Feature: gene Location: 84140-85510 bp Ori: PBX97758.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84476-85091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 4 76-85091 bp Feature: domain Description: GIIM Note: maturase Location: 85148-85364 bp Feature: domain Description: GIIM Note: maturase Location: 8514 8-85364 bp Feature: gene Location: 85591-85889 bp Feature: gene Location: 85931-86647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)