myRT

myRT report for GCA_002330385.1_ASM233038v1

Download annotations/find similar RTs

Seq: NRBD01000031.1 Pseudomonas aeruginosa strain env092b NODE_31_length_52531_cov_12.7036, whole genome shotgun sequence (52531 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-530 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 1 70-365 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2220 bp Feature: gene Location: 2468-2794 bp Feature: gene Location: 4313-5857 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 51 71 -5660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), CHD (cd07302)

Seq: NRBD01000005.1 Pseudomonas aeruginosa strain env092b NODE_5_length_378770_cov_11.3213, whole genome shotgun sequence (378770 bp)
Overview 1 RT 1: 52137-60319 bp 2 RT 2: 76584-86881 bp Neighborhood of RT #1 [52137, 60327] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76584, 86892] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 52137-53153 bp Feature: domain Description: COG3178 Location: 52140-53139 bp Feature: domain Description: COG3178 Location: 52 140-53139 bp Feature: gene Location: 54026-54238 bp Feature: gene Location: 54426-56138 bp Feature: RT Description: RVT_N Location: 54483-54726 bp Feature: RT Description: RVT_N Location: 54483-5472 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54771-55407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54771-55407 bp Feature: domain Description: YkfC Location: 55614-55767 bp Feature: domain Description: YkfC Location: 55614-55767 bp Feature: domain Description: HNH Note: nucleases Location: 55944-56082 bp Feature: domain Description: HNH Note: nucleases Location: 55944-56082 bp Feature: gene Location: 56271-59054 bp Feature: domain Description: LptD Location: 56466-59040 bp Feature: domain Description: LptD Location: 56466-59040 bp Feature: gene Location: 59035-60327 bp Feature: domain Description: PRK10770 Location: 59125-60319 bp Feature: domain Description: PRK10770 Location: 5912 5-60319 bp Feature: gene Location: 76584-78437 bp Feature: domain Description: PRK05658 Location: 76596-78435 bp Feature: domain Description: PRK05658 Location: 76596-78435 bp Feature: gene Location: 78544-82281 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78652-79309 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 78652 -79309 bp Feature: domain Description: PRK09776 Location: 79522-79993 bp Feature: domain Description: PRK09776 Location: 7952 2 -79993 bp Feature: domain Description: PAS Location: 80050-80575 bp Feature: domain Description: PAS Location: 80050-80575 bp Feature: domain Description: PRK10060 Location: 80584-82231 bp Feature: domain Description: PRK10060 Location: 80584-82 2 31 bp Feature: gene Location: 83362-85047 bp Feature: RT Description: RVT_N Location: 83419-83659 bp Feature: RT Description: RVT_N Location: 83419-83659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83707-84343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83707-84343 bp Feature: domain Description: GIIM Note: maturase Location: 84397-84628 bp Feature: domain Description: GIIM Note: maturase Location: 84397-8462 8 bp Feature: domain Description: HNH Note: nucleases Location: 84880-85018 bp Feature: domain Description: HNH Note: nucleases Location: 84880-85018 bp Feature: gene Location: 85375-85512 bp Feature: gene Location: 85771-86892 bp Feature: domain Description: COG3177 Location: 85789-86881 bp Feature: domain Description: COG3177 Location: 85789-86881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )