myRT

myRT report for GCA_002330435.1_ASM233043v1

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Seq: NRBH01000014.1 Pseudomonas aeruginosa strain env054 NODE_14_length_156945_cov_11.1773, whole genome shotgun sequence (156945 bp)
Overview 1 RT 1: 52137-60319 bp 2 RT 2: 76584-86881 bp Neighborhood of RT #1 [52137, 60327] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76584, 86892] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 52137-53153 bp Feature: domain Description: COG3178 Location: 52140-53139 bp Feature: domain Description: COG31 78 Location: 521 40-531 39 bp Feature: gene Location: 54026-54238 bp Feature: gene Location: 54426-56138 bp Feature: RT Description: RVT_N Location: 54483-54726 bp Feature: RT Description: RVT_N Location: 54483-54726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54771-55407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54771 -55407 bp Feature: domain Description: YkfC Location: 55614-55767 bp Feature: domain Description: YkfC Location: 5561 4-55767 bp Feature: domain Description: HNH Note: nucleases Location: 55944-56082 bp Feature: domain Description: HNH Note: nucleases Location: 55944-56082 bp Feature: gene Location: 56271-59054 bp Feature: domain Description: LptD Location: 56466-59040 bp Feature: domain Description: LptD Location: 56466-59040 bp Feature: gene Location: 59035-60327 bp Feature: domain Description: PRK10770 Location: 59125-60319 bp Feature: domain Description: PRK1 0770 Location: 591 25-6031 9 bp Feature: gene Location: 76584-78437 bp Feature: domain Description: PRK05658 Location: 76596-78435 bp Feature: domain Description: PRK05658 Location: 76596-78435 bp Feature: gene Location: 78544-82281 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78652-79309 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78652-79309 bp Feature: domain Description: PRK09776 Location: 79522-79993 bp Feature: domain Description: PRK09776 Location: 79522-79993 bp Feature: domain Description: PAS Location: 80050-80575 bp Feature: domain Description: PAS Location: 80050-80575 bp Feature: domain Description: PRK10060 Location: 80584-82231 bp Feature: domain Description: PRK1 0060 Location: 80584-82231 bp Feature: gene Location: 83362-85047 bp Feature: RT Description: RVT_N Location: 83419-83659 bp Feature: RT Description: RVT_N Location: 8341 9-83659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83707-84343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83707-84343 bp Feature: domain Description: GIIM Note: maturase Location: 84397-84628 bp Feature: domain Description: GIIM Note: maturase Location: 84397-84628 bp Feature: domain Description: HNH Note: nucleases Location: 84880-85018 bp Feature: domain Description: HNH Note: nucleases Location: 84880-8501 8 bp Feature: gene Location: 85375-85512 bp Feature: gene Location: 85771-86892 bp Feature: domain Description: COG3177 Location: 85789-86881 bp Feature: domain Description: COG31 77 Location: 85789-86881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: NRBH01000042.1 Pseudomonas aeruginosa strain env054 NODE_42_length_21159_cov_16.8563, whole genome shotgun sequence (21159 bp)
Overview 1 RT 1: 8132-11315 bp Neighborhood of RT #1 [8132, 11315] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 8132-8716 bp Feature: domain Description: DUF1566 Location: 8378-8702 bp Feature: domain Description: DUF1566 Location: 8378-8702 bp Feature: gene Location: 8755-9111 bp Feature: domain Description: Avd_like Location: 8782-9085 bp Feature: domain Description: Avd_like Location: 8782 -9085 bp Feature: gene Location: 9384-10493 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9561-10245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9561-102 45 bp Feature: gene Location: 10598-10903 bp Feature: gene Location: 10938-11315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: NRBH01000006.1 Pseudomonas aeruginosa strain env054 NODE_6_length_317910_cov_10.7829, whole genome shotgun sequence (317910 bp)
Overview 1 RT 1: 75317-82127 bp Neighborhood of RT #1 [75317, 82324] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 75317-76144 bp Feature: domain Description: ABC_phnC Location: 75347-76061 bp Feature: domain Description: ABC_phnC Location: 753 47-76061 bp Feature: gene Location: 76487-76997 bp Feature: domain Description: DUF772 Location: 76637-76832 bp Feature: domain Description: DUF772 Location: 7663 7-7683 2 bp Feature: gene Location: 77517-78785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77730-78387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7773 0-783 87 bp Feature: domain Description: GIIM Note: maturase Location: 78465-78687 bp Feature: domain Description: GIIM Note: maturase Location: 78465-78687 bp Feature: gene Location: 78935-79261 bp Feature: gene Location: 80780-82324 bp Feature: domain Description: CHD Location: 80996-81410 bp Feature: domain Description: CHD Location: 80996-81410 bp Feature: domain Description: CHD Location: 81638-82127 bp Feature: domain Description: CHD Location: 8163 8-82127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)