myRT

myRT report for GCA_002330505.1_ASM233050v1

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Seq: NRFQ01000004.1 Pseudomonas aeruginosa strain env408 NODE_4_length_289414_cov_21.6107, whole genome shotgun sequence (289414 bp)
Overview 1 RT 1: 195167-205472 bp Neighborhood of RT #1 [195167, 205474] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 195167-196288 bp Feature: domain Description: COG3177 Location: 195185-196277 bp Feature: domain Description: COG31 77 Location: 1 951 85-1 96277 bp Feature: gene Location: 196547-196683 bp Feature: gene Location: 197011-198696 bp Feature: RT Description: RVT_N Location: 197068-197308 bp Feature: RT Description: RVT_N Location: 1 97068-1 97308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197356-197992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97356-1 97992 bp Feature: domain Description: GIIM Note: maturase Location: 198046-198277 bp Feature: domain Description: GIIM Note: maturase Location: 1 98046-1 98277 bp Feature: domain Description: HNH Note: nucleases Location: 198529-198667 bp Feature: domain Description: HNH Note: nucleases Location: 1 98529-1 98667 bp Feature: gene Location: 199777-203514 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199885-200542 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99885-200542 bp Feature: domain Description: PRK09776 Location: 200755-201226 bp Feature: domain Description: PRK09776 Location: 200755-201 226 bp Feature: domain Description: PAS Location: 201271-201808 bp Feature: domain Description: PAS Location: 201 271 -201 808 bp Feature: domain Description: PRK10060 Location: 201817-203464 bp Feature: domain Description: PRK1 0060 Location: 201 81 7-203464 bp Feature: gene Location: 203621-205474 bp Feature: domain Description: PRK05658 Location: 203633-205472 bp Feature: domain Description: PRK05658 Location: 203633-205472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)