myRT

myRT report for GCA_002330515.1_ASM233051v1

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Seq: NRBM01000006.1 Pseudomonas aeruginosa strain env005 NODE_6_length_295761_cov_16.2116, whole genome shotgun sequence (295761 bp)
Overview 1 RT 1: 198549-208855 bp 2 RT 2: 225114-233281 bp Neighborhood of RT #1 [198549, 208857] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [225114, 233295] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 198549-199670 bp Feature: domain Description: COG3177 Location: 198567-199659 bp Feature: domain Description: COG31 77 Location: 1 98567-1 99659 bp Feature: gene Location: 199929-200066 bp Feature: gene Location: 200394-202079 bp Feature: RT Description: RVT_N Location: 200451-200691 bp Feature: RT Description: RVT_N Location: 200451 -200691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200739-201375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200739-201 375 bp Feature: domain Description: GIIM Note: maturase Location: 201429-201660 bp Feature: domain Description: GIIM Note: maturase Location: 201 429-201 660 bp Feature: domain Description: HNH Note: nucleases Location: 201912-202050 bp Feature: domain Description: HNH Note: nucleases Location: 201 91 2-202050 bp Feature: gene Location: 203160-206897 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 203268-203925 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 203268-203925 bp Feature: domain Description: PRK09776 Location: 204138-204609 bp Feature: domain Description: PRK09776 Location: 2041 38-204609 bp Feature: domain Description: PAS Location: 204681-205191 bp Feature: domain Description: PAS Location: 204681 -2051 91 bp Feature: domain Description: PRK10060 Location: 205200-206847 bp Feature: domain Description: PRK1 0060 Location: 205200-206847 bp Feature: gene Location: 207004-208857 bp Feature: domain Description: PRK05658 Location: 207016-208855 bp Feature: domain Description: PRK05658 Location: 20701 6-208855 bp Feature: gene Location: 225114-226406 bp Feature: domain Description: PRK10770 Location: 225204-226398 bp Feature: domain Description: PRK1 0770 Location: 225204-226398 bp Feature: gene Location: 226387-229161 bp Feature: domain Description: LptD Location: 226582-229147 bp Feature: domain Description: LptD Location: 226582-2291 47 bp Feature: gene Location: 229294-231006 bp Feature: RT Description: RVT_N Location: 229351-229594 bp Feature: RT Description: RVT_N Location: 229351 -229594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229639-230275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229639-230275 bp Feature: domain Description: YkfC Location: 230485-230635 bp Feature: domain Description: YkfC Location: 230485-230635 bp Feature: domain Description: HNH Note: nucleases Location: 230812-230950 bp Feature: domain Description: HNH Note: nucleases Location: 23081 2-230950 bp Feature: gene Location: 231194-231406 bp Feature: gene Location: 232279-233295 bp Feature: domain Description: COG3178 Location: 232282-233281 bp Feature: domain Description: COG31 78 Location: 232282-233281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )