myRT

myRT report for GCA_002330695.1_ASM233069v1

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Seq: NRAU01000033.1 Pseudomonas aeruginosa strain env109b NODE_33_length_13400_cov_44.5752, whole genome shotgun sequence (13400 bp)
Overview 1 RT 1: 121-5554 bp Neighborhood of RT #1 [121, 5589] DUF3800 RVT-UG1 HTH_ARSR AlpA Feature: gene Location: 121-459 bp Ori: PBY00614.1 Feature: domain Description: DUF3800 Location: 139-412 bp Feature: domain Description: DUF3800 Location: 1 39-41 2 bp Feature: gene Location: 456-1535 bp Feature: gene Location: 2110-4455 bp Ori: PBY00616.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2911-3448 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 291 1 -3448 bp Feature: gene Location: 4767-5297 bp Ori: PBY00627.1 Feature: domain Description: HTH_ARSR Location: 4881-5007 bp Feature: domain Description: HTH_ARSR Location: 4881 -5007 bp Feature: gene Location: 5350-5589 bp Ori: PBY00617.1 Feature: domain Description: AlpA Location: 5386-5554 bp Feature: domain Description: AlpA Location: 5386-5554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-UG1, HTH_ARSR (smart00418), AlpA (COG3311)

Seq: NRAU01000010.1 Pseudomonas aeruginosa strain env109b NODE_10_length_256776_cov_27.5354, whole genome shotgun sequence (256776 bp)
Overview 1 RT 1: 157175-161250 bp Neighborhood of RT #1 [157175, 161250] DUF3085 RVT-GII GIIM Feature: gene Location: 157175-157540 bp Ori: PBY03434.1 Feature: domain Description: DUF3085 Location: 157241-157511 bp Feature: domain Description: DUF3085 Location: 1572 41-157511 bp Feature: gene Location: 157606-158403 bp Feature: gene Location: 158743-160113 bp Ori: PBY03436.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159079-159694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159079-159694 bp Feature: domain Description: GIIM Note: maturase Location: 159751-159967 bp Feature: domain Description: GIIM Note: maturase Location: 159751-159967 bp Feature: gene Location: 160194-160492 bp Feature: gene Location: 160534-161250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: NRAU01000019.1 Pseudomonas aeruginosa strain env109b NODE_19_length_140946_cov_32.8916, whole genome shotgun sequence (140946 bp)
Overview 1 RT 1: 36419-46063 bp Neighborhood of RT #1 [36419, 46077] CoxL DUF4354 RVT-Retrons HATPase_c_3 DUF262 COG3472 Feature: gene Location: 36419-38623 bp Ori: PBY01578.1 Feature: domain Description: CoxL Location: 36437-38618 bp Feature: domain Description: CoxL Location: 3 643 7-3 8618 bp Feature: gene Location: 39118-39498 bp Ori: PBY01579.1 Feature: domain Description: DUF4354 Location: 39121-39487 bp Feature: domain Description: DUF43 54 Location: 3 9121-3 9487 bp Feature: gene Location: 41215-42168 bp Ori: PBY01580.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41326-41920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 413 26-41920 bp Feature: gene Location: 42349-44304 bp Ori: PBY01690.1 Feature: domain Description: HATPase_c_3 Location: 42418-42766 bp Feature: domain Description: HATPase_c_3 Location: 42418-42766 bp Feature: gene Location: 44413-46077 bp Ori: PBY01581.1 Feature: domain Description: DUF262 Location: 44518-45103 bp Feature: domain Description: DUF262 Location: 44518-45103 bp Feature: domain Description: COG3472 Location: 45235-46063 bp Feature: domain Description: COG3 472 Location: 4523 5-46063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxL (COG1529), DUF4354 (pfam14263), RVT-Retrons, HATPase_c_3 (pfam13589), DUF262 (pfam03235), COG3472 (Uncharacterized protein )

Seq: NRAU01000005.1 Pseudomonas aeruginosa strain env109b NODE_5_length_435594_cov_29.0564, whole genome shotgun sequence (435594 bp)
Overview 1 RT 1: 50325-58525 bp Neighborhood of RT #1 [50325, 58533] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 50325-51341 bp Ori: PBY04777.1 Feature: domain Description: COG3178 Location: 50328-51327 bp Feature: domain Description: COG3178 Location: 50328-51327 bp Feature: gene Location: 52214-52426 bp Feature: gene Location: 52614-54326 bp Ori: PBY04778.1 Gene: ltrA Feature: domain Description: RVT_N Location: 52671-52914 bp Feature: domain Description: RVT_N Location: 52671-52914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52959-53595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52959-53595 bp Feature: domain Description: YkfC Location: 53802-53955 bp Feature: domain Description: YkfC Location: 53802-53955 bp Feature: domain Description: HNH Note: nucleases Location: 54132-54270 bp Feature: domain Description: HNH Note: nucleases Location: 54 132-54 270 bp Feature: gene Location: 54459-57260 bp Ori: PBY04779.1 Feature: domain Description: LptD Location: 54654-57246 bp Feature: domain Description: LptD Location: 54 654 -5724 6 bp Feature: gene Location: 57241-58533 bp Ori: PBY04780.1 Feature: domain Description: PRK10770 Location: 57331-58525 bp Feature: domain Description: PRK10770 Location: 57331-58525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)