myRT

myRT report for GCA_002330835.1_ASM233083v1

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Seq: NRBI01000007.1 Pseudomonas aeruginosa strain env050 NODE_7_length_231093_cov_15.2136, whole genome shotgun sequence (231093 bp)
Overview 1 RT 1: 146034-156340 bp 2 RT 2: 172598-180780 bp Neighborhood of RT #1 [146034, 156342] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172598, 180794] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 146034-147155 bp Ori: PBY90036.1 Feature: domain Description: COG3177 Location: 146052-147144 bp Feature: domain Description: COG31 77 Location: 1 46052-1 471 44 bp Feature: gene Location: 147414-147551 bp Feature: gene Location: 147879-149564 bp Ori: PBY90038.1 Gene: ltrA Feature: domain Description: RVT_N Location: 147936-148176 bp Feature: domain Description: RVT_N Location: 1 47936-1 481 76 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148224-148860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48224-1 48860 bp Feature: domain Description: GIIM Note: maturase Location: 148914-149145 bp Feature: domain Description: GIIM Note: maturase Location: 1 4891 4-1 491 45 bp Feature: domain Description: HNH Note: nucleases Location: 149397-149535 bp Feature: domain Description: HNH Note: nucleases Location: 1 49397-1 49535 bp Feature: gene Location: 150645-154382 bp Ori: PBY90039.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 150753-151410 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 50753-1 51 41 0 bp Feature: domain Description: PRK09776 Location: 151623-152094 bp Feature: domain Description: PRK09776 Location: 1 51 623-1 52094 bp Feature: domain Description: PAS Location: 152184-152676 bp Feature: domain Description: PAS Location: 1 521 84-1 52676 bp Feature: domain Description: PRK10060 Location: 152685-154332 bp Feature: domain Description: PRK1 0060 Location: 1 52685-1 54332 bp Feature: gene Location: 154489-156342 bp Ori: PBY90040.1 Feature: domain Description: PRK05658 Location: 154501-156340 bp Feature: domain Description: PRK05658 Location: 1 54501 -1 56340 bp Feature: gene Location: 172598-173890 bp Ori: PBY90058.1 Feature: domain Description: PRK10770 Location: 172688-173882 bp Feature: domain Description: PRK1 0770 Location: 1 72688-1 73882 bp Feature: gene Location: 173871-176660 bp Ori: PBY90059.1 Feature: domain Description: LptD Location: 174066-176646 bp Feature: domain Description: LptD Location: 1 74066-1 76646 bp Feature: gene Location: 176793-178505 bp Ori: PBY90060.1 Gene: ltrA Feature: domain Description: RVT_N Location: 176850-177093 bp Feature: domain Description: RVT_N Location: 1 76850-1 77093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177138-177774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 771 38-1 77774 bp Feature: domain Description: YkfC Location: 177984-178134 bp Feature: domain Description: YkfC Location: 1 77984-1 781 34 bp Feature: domain Description: HNH Note: nucleases Location: 178311-178449 bp Feature: domain Description: HNH Note: nucleases Location: 1 7831 1 -1 78449 bp Feature: gene Location: 178693-178905 bp Feature: gene Location: 179778-180794 bp Ori: PBY90062.1 Feature: domain Description: COG3178 Location: 179781-180780 bp Feature: domain Description: COG31 78 Location: 1 79781 -1 80780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NRBI01000014.1 Pseudomonas aeruginosa strain env050 NODE_14_length_150537_cov_15.4909, whole genome shotgun sequence (150537 bp)
Overview 1 RT 1: 111209-118019 bp Neighborhood of RT #1 [111209, 118216] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 111209-112036 bp Ori: PBY88822.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 111239-111953 bp Feature: domain Description: ABC_phnC Location: 1112 39-111953 bp Feature: gene Location: 112379-112889 bp Feature: domain Description: DUF772 Location: 112529-112724 bp Feature: domain Description: DUF772 Location: 112 52 9-112 72 4 bp Feature: gene Location: 113409-114677 bp Ori: PBY88823.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113622-114279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11362 2 -1142 79 bp Feature: domain Description: GIIM Note: maturase Location: 114357-114579 bp Feature: domain Description: GIIM Note: maturase Location: 114357-114579 bp Feature: gene Location: 114827-115153 bp Feature: gene Location: 116672-118216 bp Ori: PBY88824.1 Feature: domain Description: CHD Location: 116888-117302 bp Feature: domain Description: CHD Location: 116888-117302 bp Feature: domain Description: CHD Location: 117530-118019 bp Feature: domain Description: CHD Location: 117530-118019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NRBI01000005.1 Pseudomonas aeruginosa strain env050 NODE_5_length_251569_cov_13.8467, whole genome shotgun sequence (251569 bp)
Overview 1 RT 1: 114521-122342 bp Neighborhood of RT #1 [114521, 123589] YhcG RadC RVT-UG8 RVT-UG3 DUF932 Spo0J Feature: gene Location: 114521-115687 bp Ori: PBY90460.1 Feature: domain Description: YhcG Location: 114959-115436 bp Feature: domain Description: YhcG Location: 114959-11543 6 bp Feature: gene Location: 116023-116532 bp Ori: PBY90461.1 Feature: domain Description: RadC Location: 116074-116530 bp Feature: domain Description: RadC Location: 116074-11653 0 bp Feature: gene Location: 116777-118732 bp Ori: PBY90462.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 117299-117740 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 117299-117740 bp Feature: gene Location: 118742-120025 bp Ori: PBY90463.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 119045-119543 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 119045-119543 bp Feature: gene Location: 120637-121464 bp Ori: PBY90464.1 Feature: domain Description: DUF932 Location: 120748-121429 bp Feature: domain Description: DUF93 2 Location: 120748-121429 bp Feature: gene Location: 121544-123589 bp Ori: PBY90465.1 Feature: domain Description: Spo0J Location: 121610-122342 bp Feature: domain Description: Spo0J Location: 121610-1223 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), RadC (pfam04002), RVT-UG8, RVT-UG3, DUF932 (pfam06067), Spo0J (COG1475)

Seq: NRBI01000027.1 Pseudomonas aeruginosa strain env050 NODE_27_length_84731_cov_15.4584, whole genome shotgun sequence (84731 bp)
Overview 1 RT 1: 33265-36803 bp Neighborhood of RT #1 [33265, 36803] SLATT_5 RVT-UG17 Feature: gene Location: 33265-33585 bp Feature: gene Location: 33946-34488 bp Ori: PBY87358.1 Feature: domain Description: SLATT_5 Location: 33952-34462 bp Feature: domain Description: SLATT_5 Location: 33952-34 4 62 bp Feature: gene Location: 34485-35849 bp Ori: PBY87359.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34713-35316 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34 713-35316 bp Feature: gene Location: 35891-36361 bp Feature: gene Location: 36378-36803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17