myRT

myRT report for GCA_002330865.1_ASM233086v1

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Seq: NRBO01000017.1 Pseudomonas aeruginosa strain env079 NODE_17_length_130088_cov_12.6023, whole genome shotgun sequence (130088 bp)
Overview 1 RT 1: 48152-58457 bp Neighborhood of RT #1 [48152, 58459] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 48152-49273 bp Feature: domain Description: COG3177 Location: 48170-49262 bp Feature: domain Description: COG31 77 Location: 481 70-49262 bp Feature: gene Location: 49532-49668 bp Feature: gene Location: 49996-51681 bp Feature: RT Description: RVT_N Location: 50053-50293 bp Feature: RT Description: RVT_N Location: 50053-50293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50341-50977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50341 -50977 bp Feature: domain Description: GIIM Note: maturase Location: 51031-51262 bp Feature: domain Description: GIIM Note: maturase Location: 51 031 -51 262 bp Feature: domain Description: HNH Note: nucleases Location: 51514-51652 bp Feature: domain Description: HNH Note: nucleases Location: 51 51 4-51 652 bp Feature: gene Location: 52762-56499 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 52870-53527 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 52870-53527 bp Feature: domain Description: PRK09776 Location: 53740-54211 bp Feature: domain Description: PRK09776 Location: 53740-5421 1 bp Feature: domain Description: PAS Location: 54268-54793 bp Feature: domain Description: PAS Location: 54268-54793 bp Feature: domain Description: PRK10060 Location: 54805-56449 bp Feature: domain Description: PRK1 0060 Location: 54805-56449 bp Feature: gene Location: 56606-58459 bp Feature: domain Description: PRK05658 Location: 56618-58457 bp Feature: domain Description: PRK05658 Location: 5661 8-58457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)