myRT

myRT report for GCA_002330875.1_ASM233087v1

Download annotations/find similar RTs

Seq: NRBK01000029.1 Pseudomonas aeruginosa strain env043 NODE_29_length_85697_cov_19.2622, whole genome shotgun sequence (85697 bp)
Overview 1 RT 1: 26972-31853 bp Neighborhood of RT #1 [26972, 31861] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG Feature: gene Location: 26972-28306 bp Ori: PBZ00228.1 Feature: domain Description: PRK13360 Location: 26975-28298 bp Feature: domain Description: PRK1 3360 Location: 26975-28298 bp Feature: gene Location: 28373-28735 bp Ori: PBZ00229.1 Feature: domain Description: COG3450 Location: 28376-28721 bp Feature: domain Description: COG3450 Location: 28376-28721 bp Feature: gene Location: 28947-30644 bp Ori: PBZ00230.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29004-29247 bp Feature: domain Description: RVT_N Location: 29004-29247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29292-29928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29292-29928 bp Feature: domain Description: YkfC Location: 30150-30285 bp Feature: domain Description: YkfC Location: 301 50-30285 bp Feature: domain Description: HNHc Note: nucleases Location: 30432-30597 bp Feature: domain Description: HNHc Note: nucleases Location: 30432-30597 bp Feature: gene Location: 30840-31217 bp Feature: gene Location: 31706-31861 bp Ori: PBZ00232.1 Gene: rpmG Feature: domain Description: rpmG Location: 31709-31853 bp Feature: domain Description: rpmG Location: 31 709-31 853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595)

Seq: NRBK01000004.1 Pseudomonas aeruginosa strain env043 NODE_4_length_282052_cov_18.9361, whole genome shotgun sequence (282052 bp)
Overview 1 RT 1: 197162-207468 bp 2 RT 2: 223726-231908 bp Neighborhood of RT #1 [197162, 207470] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223726, 231922] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 197162-198283 bp Ori: PBZ04206.1 Feature: domain Description: COG3177 Location: 197180-198272 bp Feature: domain Description: COG3177 Location: 197180-1982 72 bp Feature: gene Location: 198542-198679 bp Feature: gene Location: 199007-200692 bp Ori: PBZ04208.1 Gene: ltrA Feature: domain Description: RVT_N Location: 199064-199304 bp Feature: domain Description: RVT_N Location: 199064-199304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199352-199988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199352 -199988 bp Feature: domain Description: GIIM Note: maturase Location: 200042-200273 bp Feature: domain Description: GIIM Note: maturase Location: 2 00042 -2 002 73 bp Feature: domain Description: HNH Note: nucleases Location: 200525-200663 bp Feature: domain Description: HNH Note: nucleases Location: 2 0052 5-2 00663 bp Feature: gene Location: 201773-205510 bp Ori: PBZ04209.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 201881-202538 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 01881-2 02 538 bp Feature: domain Description: PRK09776 Location: 202751-203222 bp Feature: domain Description: PRK09776 Location: 2 02 751-2 032 2 2 bp Feature: domain Description: PAS Location: 203279-203804 bp Feature: domain Description: PAS Location: 2 032 79-2 03804 bp Feature: domain Description: PRK10060 Location: 203813-205460 bp Feature: domain Description: PRK10060 Location: 2 03813-2 05460 bp Feature: gene Location: 205617-207470 bp Ori: PBZ04210.1 Feature: domain Description: PRK05658 Location: 205629-207468 bp Feature: domain Description: PRK05658 Location: 2 0562 9-2 07468 bp Feature: gene Location: 223726-225018 bp Ori: PBZ04228.1 Feature: domain Description: PRK10770 Location: 223816-225010 bp Feature: domain Description: PRK10770 Location: 2 2 3816-2 2 5010 bp Feature: gene Location: 224999-227788 bp Ori: PBZ04229.1 Feature: domain Description: LptD Location: 225194-227774 bp Feature: domain Description: LptD Location: 2 2 5194-2 2 7774 bp Feature: gene Location: 227921-229633 bp Ori: PBZ04230.1 Gene: ltrA Feature: domain Description: RVT_N Location: 227978-228221 bp Feature: domain Description: RVT_N Location: 2 2 7978-2 2 82 2 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228266-228902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 82 66-2 2 8902 bp Feature: domain Description: YkfC Location: 229112-229262 bp Feature: domain Description: YkfC Location: 2 2 9112 -2 2 92 62 bp Feature: domain Description: HNH Note: nucleases Location: 229439-229577 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 9439-2 2 9577 bp Feature: gene Location: 229821-230033 bp Feature: gene Location: 230906-231922 bp Ori: PBZ04232.1 Feature: domain Description: COG3178 Location: 230909-231908 bp Feature: domain Description: COG3178 Location: 2 30909-2 31908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NRBK01000030.1 Pseudomonas aeruginosa strain env043 NODE_30_length_85686_cov_20.4197, whole genome shotgun sequence (85686 bp)
Overview 1 RT 1: 46353-53163 bp Neighborhood of RT #1 [46353, 53360] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 46353-47180 bp Ori: PBZ00173.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 46383-47097 bp Feature: domain Description: ABC_phnC Location: 463 83 -47097 bp Feature: gene Location: 47523-48033 bp Feature: domain Description: DUF772 Location: 47673-47868 bp Feature: domain Description: DUF772 Location: 47673 -47868 bp Feature: gene Location: 48553-49821 bp Ori: PBZ00174.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48766-49423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48766-49423 bp Feature: domain Description: GIIM Note: maturase Location: 49501-49723 bp Feature: domain Description: GIIM Note: maturase Location: 49501-49723 bp Feature: gene Location: 49971-50297 bp Feature: gene Location: 51816-53360 bp Ori: PBZ00175.1 Feature: domain Description: CHD Location: 52032-52446 bp Feature: domain Description: CHD Location: 5203 2-52446 bp Feature: domain Description: CHD Location: 52674-53163 bp Feature: domain Description: CHD Location: 52674-53 163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NRBK01000001.1 Pseudomonas aeruginosa strain env043 NODE_1_length_544012_cov_20.1489, whole genome shotgun sequence (544012 bp)
Overview 1 RT 1: 420262-427377 bp Neighborhood of RT #1 [420262, 427388] PRK10604 OmpR RVT_N RVT-GII GIIM HNH tig clpP Feature: gene Location: 420262-421548 bp Ori: PBZ05348.1 Feature: domain Description: PRK10604 Location: 420265-421537 bp Feature: domain Description: PRK10604 Location: 4 20265-4 21537 bp Feature: gene Location: 421549-422256 bp Ori: PBZ05349.1 Feature: domain Description: OmpR Location: 421573-422239 bp Feature: domain Description: OmpR Location: 4 21573-4 22239 bp Feature: gene Location: 423510-425213 bp Ori: PBZ05350.1 Gene: ltrA Feature: domain Description: RVT_N Location: 423567-423810 bp Feature: domain Description: RVT_N Location: 4 23567-4 23810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423855-424491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 23855-4 24 4 91 bp Feature: domain Description: GIIM Note: maturase Location: 424542-424776 bp Feature: domain Description: GIIM Note: maturase Location: 4 24 54 2-4 24 776 bp Feature: domain Description: HNH Note: nucleases Location: 425028-425166 bp Feature: domain Description: HNH Note: nucleases Location: 4 25028-4 25166 bp Feature: gene Location: 425343-426653 bp Ori: PBZ05351.1 Feature: domain Description: tig Location: 425346-426624 bp Feature: domain Description: tig Location: 4 2534 6-4 26624 bp Feature: gene Location: 426747-427388 bp Ori: PBZ05352.1 Gene: clpP Feature: domain Description: clpP Location: 426801-427377 bp Feature: domain Description: clpP Location: 4 26801-4 27377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10604 (sensor protein RstB; Provisional), OmpR (COG0745), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tig (TIGR00115), clpP

Seq: NRBK01000018.1 Pseudomonas aeruginosa strain env043 NODE_18_length_148937_cov_18.5725, whole genome shotgun sequence (148937 bp)
Overview 1 RT 1: 138386-145572 bp Neighborhood of RT #1 [138386, 145736] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 138386-140827 bp Ori: PBZ01462.1 Feature: domain Description: STN Location: 138545-138698 bp Feature: domain Description: STN Location: 1385 45 -138698 bp Feature: domain Description: TonB-siderophor Location: 138806-140765 bp Feature: domain Description: TonB-siderophor Location: 138806-140765 bp Feature: gene Location: 140988-141824 bp Ori: PBZ01463.1 Feature: domain Description: YHI9 Location: 141000-141816 bp Feature: domain Description: YHI9 Location: 141000-141816 bp Feature: gene Location: 142008-143297 bp Ori: PBZ01464.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 142200-142986 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 142200-142986 bp Feature: gene Location: 143853-145121 bp Ori: PBZ01465.1 Gene: fabF Feature: domain Description: PRK06333 Location: 143859-145116 bp Feature: domain Description: PRK06333 Location: 14385 9-145 116 bp Feature: gene Location: 145230-145736 bp Ori: PBZ01466.1 Feature: domain Description: HxlR Location: 145254-145572 bp Feature: domain Description: HxlR Location: 145 25 4-145 5 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: NRBK01000021.1 Pseudomonas aeruginosa strain env043 NODE_21_length_121624_cov_18.1139, whole genome shotgun sequence (121624 bp)
Overview 1 RT 1: 83855-88452 bp Neighborhood of RT #1 [83855, 88481] RVT_N RVT-GII GIIM HNHc TIGR00244 ribD Feature: gene Location: 83855-84031 bp Feature: gene Location: 84724-84932 bp Feature: gene Location: 85096-86802 bp Ori: PBZ01016.1 Gene: ltrA Feature: domain Description: RVT_N Location: 85153-85390 bp Feature: domain Description: RVT_N Location: 85153-85390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85441-86077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85441-86 077 bp Feature: domain Description: GIIM Note: maturase Location: 86128-86362 bp Feature: domain Description: GIIM Note: maturase Location: 86 128-86 36 2 bp Feature: domain Description: HNHc Note: nucleases Location: 86581-86746 bp Feature: domain Description: HNHc Note: nucleases Location: 86 581-86 746 bp Feature: gene Location: 86899-87363 bp Ori: PBZ01017.1 Gene: nrdR Feature: domain Description: TIGR00244 Location: 86902-87340 bp Feature: domain Description: TIGR00244 Location: 86 902-87340 bp Feature: gene Location: 87360-88481 bp Ori: PBZ01018.1 Gene: ribD Feature: domain Description: ribD Location: 87375-88452 bp Feature: domain Description: ribD Location: 87375-88452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786)