myRT

myRT report for GCA_002330925.1_ASM233092v1

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Seq: NRBP01000009.1 Pseudomonas aeruginosa strain env091 NODE_9_length_230899_cov_10.7902, whole genome shotgun sequence (230899 bp)
Overview 1 RT 1: 145843-156149 bp 2 RT 2: 172407-180589 bp Neighborhood of RT #1 [145843, 156151] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172407, 180603] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 145843-146964 bp Feature: domain Description: COG3177 Location: 145861-146953 bp Feature: domain Description: COG31 77 Location: 1 45861 -1 46953 bp Feature: gene Location: 147223-147360 bp Feature: gene Location: 147688-149373 bp Feature: RT Description: RVT_N Location: 147745-147985 bp Feature: RT Description: RVT_N Location: 1 47745-1 47985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148033-148669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48033-1 48669 bp Feature: domain Description: GIIM Note: maturase Location: 148723-148954 bp Feature: domain Description: GIIM Note: maturase Location: 1 48723-1 48954 bp Feature: domain Description: HNH Note: nucleases Location: 149206-149344 bp Feature: domain Description: HNH Note: nucleases Location: 1 49206-1 49344 bp Feature: gene Location: 150454-154191 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150562-151219 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 50562-1 51 21 9 bp Feature: domain Description: PRK09776 Location: 151432-151903 bp Feature: domain Description: PRK09776 Location: 1 51 432-1 51 903 bp Feature: domain Description: PAS Location: 151960-152485 bp Feature: domain Description: PAS Location: 1 51 960-1 52485 bp Feature: domain Description: PRK10060 Location: 152494-154141 bp Feature: domain Description: PRK1 0060 Location: 1 52494-1 541 41 bp Feature: gene Location: 154298-156151 bp Feature: domain Description: PRK05658 Location: 154310-156149 bp Feature: domain Description: PRK05658 Location: 1 5431 0-1 561 49 bp Feature: gene Location: 172407-173699 bp Feature: domain Description: PRK10770 Location: 172497-173691 bp Feature: domain Description: PRK1 0770 Location: 1 72497-1 73691 bp Feature: gene Location: 173680-176469 bp Feature: domain Description: LptD Location: 173875-176455 bp Feature: domain Description: LptD Location: 1 73875-1 76455 bp Feature: gene Location: 176602-178314 bp Feature: RT Description: RVT_N Location: 176659-176902 bp Feature: RT Description: RVT_N Location: 1 76659-1 76902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176947-177583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 76947-1 77583 bp Feature: domain Description: YkfC Location: 177790-177943 bp Feature: domain Description: YkfC Location: 1 77790-1 77943 bp Feature: domain Description: HNH Note: nucleases Location: 178120-178258 bp Feature: domain Description: HNH Note: nucleases Location: 1 781 20-1 78258 bp Feature: gene Location: 178502-178714 bp Feature: gene Location: 179587-180603 bp Feature: domain Description: COG3178 Location: 179590-180589 bp Feature: domain Description: COG31 78 Location: 1 79590-1 80589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )