myRT

myRT report for GCA_002332085.1_ASM233208v1

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Seq: NRGJ01000006.1 Pseudomonas aeruginosa strain env110b NODE_6_length_256604_cov_12.3702, whole genome shotgun sequence (256604 bp)
Overview 1 RT 1: 157175-161250 bp Neighborhood of RT #1 [157175, 161250] DUF3085 RVT-GII GIIM Feature: gene Location: 157175-157540 bp Ori: PCB86035.1 Feature: domain Description: DUF3085 Location: 157241-157511 bp Feature: domain Description: DUF3085 Location: 1 57241 -1 5751 1 bp Feature: gene Location: 157606-158403 bp Feature: gene Location: 158743-160113 bp Ori: PCB86037.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159079-159694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59079-1 59694 bp Feature: domain Description: GIIM Note: maturase Location: 159751-159967 bp Feature: domain Description: GIIM Note: maturase Location: 1 59751 -1 59967 bp Feature: gene Location: 160194-160492 bp Feature: gene Location: 160534-161250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: NRGJ01000019.1 Pseudomonas aeruginosa strain env110b NODE_19_length_140946_cov_12.5753, whole genome shotgun sequence (140946 bp)
Overview 1 RT 1: 36419-46063 bp Neighborhood of RT #1 [36419, 46077] CoxL DUF4354 RVT-Retrons HATPase_c_3 DUF262 COG3472 Feature: gene Location: 36419-38623 bp Ori: PCB83527.1 Feature: domain Description: CoxL Location: 36437-38618 bp Feature: domain Description: CoxL Location: 36437-38618 bp Feature: gene Location: 39118-39498 bp Ori: PCB83528.1 Feature: domain Description: DUF4354 Location: 39121-39487 bp Feature: domain Description: DUF4354 Location: 3912 1-39487 bp Feature: gene Location: 41215-42168 bp Ori: PCB83529.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41326-41920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4132 6-4192 0 bp Feature: gene Location: 42349-44304 bp Ori: PCB83639.1 Feature: domain Description: HATPase_c_3 Location: 42418-42766 bp Feature: domain Description: HATPase_c_3 Location: 42 418-42 766 bp Feature: gene Location: 44413-46077 bp Ori: PCB83530.1 Feature: domain Description: DUF262 Location: 44518-45103 bp Feature: domain Description: DUF2 62 Location: 44518-45103 bp Feature: domain Description: COG3472 Location: 45235-46063 bp Feature: domain Description: COG3472 Location: 452 35-46063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxL (COG1529), DUF4354 (pfam14263), RVT-Retrons, HATPase_c_3 (pfam13589), DUF262 (pfam03235), COG3472 (Uncharacterized protein )

Seq: NRGJ01000005.1 Pseudomonas aeruginosa strain env110b NODE_5_length_282281_cov_13.0747, whole genome shotgun sequence (282281 bp)
Overview 1 RT 1: 50325-58525 bp Neighborhood of RT #1 [50325, 58533] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 50325-51341 bp Ori: PCB86179.1 Feature: domain Description: COG3178 Location: 50328-51327 bp Feature: domain Description: COG3 178 Location: 503 28-513 27 bp Feature: gene Location: 52214-52426 bp Feature: gene Location: 52614-54326 bp Ori: PCB86180.1 Gene: ltrA Feature: domain Description: RVT_N Location: 52671-52914 bp Feature: domain Description: RVT_N Location: 52671-52914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52959-53595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52959-53 595 bp Feature: domain Description: YkfC Location: 53802-53955 bp Feature: domain Description: YkfC Location: 53 802-53 955 bp Feature: domain Description: HNH Note: nucleases Location: 54132-54270 bp Feature: domain Description: HNH Note: nucleases Location: 5413 2-54270 bp Feature: gene Location: 54459-57260 bp Ori: PCB86181.1 Feature: domain Description: LptD Location: 54654-57246 bp Feature: domain Description: LptD Location: 54654-57246 bp Feature: gene Location: 57241-58533 bp Ori: PCB86182.1 Feature: domain Description: PRK10770 Location: 57331-58525 bp Feature: domain Description: PRK10770 Location: 573 3 1-58525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: NRGJ01000040.1 Pseudomonas aeruginosa strain env110b NODE_40_length_45736_cov_15.1465, whole genome shotgun sequence (45736 bp)
Overview 1 RT 1: 40148-45569 bp Neighborhood of RT #1 [40148, 45616] AlpA HTH_ARSR RVT-UG1 DUF3800 Feature: gene Location: 40148-40387 bp Ori: PCB81892.1 Feature: domain Description: AlpA Location: 40184-40352 bp Feature: domain Description: AlpA Location: 4 0184 -4 0352 bp Feature: gene Location: 40440-40970 bp Ori: PCB81897.1 Feature: domain Description: HTH_ARSR Location: 40554-40680 bp Feature: domain Description: HTH_ARSR Location: 4 0554 -4 0680 bp Feature: gene Location: 41282-43627 bp Ori: PCB81893.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 42083-42620 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 4 2083-4 2620 bp Feature: gene Location: 44202-45281 bp Feature: gene Location: 45278-45616 bp Ori: PCB81895.1 Feature: domain Description: DUF3800 Location: 45296-45569 bp Feature: domain Description: DUF3800 Location: 4 5296-4 5569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), HTH_ARSR (smart00418), RVT-UG1, DUF3800 (pfam12686)