myRT

myRT report for GCA_002332165.1_ASM233216v1

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Seq: NRGM01000008.1 Pseudomonas aeruginosa strain env051b NODE_8_length_202456_cov_9.45052, whole genome shotgun sequence (202456 bp)
Overview 1 RT 1: 114521-122342 bp Neighborhood of RT #1 [114521, 123589] YhcG RadC RVT-UG8 RVT-UG3 DUF932 Spo0J Feature: gene Location: 114521-115687 bp Ori: PCC04459.1 Feature: domain Description: YhcG Location: 114959-115436 bp Feature: domain Description: YhcG Location: 1 1 4959-1 1 5436 bp Feature: gene Location: 116023-116532 bp Ori: PCC04460.1 Feature: domain Description: RadC Location: 116074-116530 bp Feature: domain Description: RadC Location: 1 1 6074-1 1 6530 bp Feature: gene Location: 116777-118732 bp Ori: PCC04461.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 117299-117740 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 1 7299-1 1 7740 bp Feature: gene Location: 118742-120025 bp Ori: PCC04462.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 119045-119543 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 1 9045-1 1 9543 bp Feature: gene Location: 120637-121464 bp Ori: PCC04463.1 Feature: domain Description: DUF932 Location: 120748-121429 bp Feature: domain Description: DUF932 Location: 1 20748-1 21 429 bp Feature: gene Location: 121544-123589 bp Ori: PCC04464.1 Feature: domain Description: Spo0J Location: 121610-122342 bp Feature: domain Description: Spo0J Location: 1 21 61 0-1 22342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), RadC (pfam04002), RVT-UG8, RVT-UG3, DUF932 (pfam06067), Spo0J (COG1475)

Seq: NRGM01000013.1 Pseudomonas aeruginosa strain env051b NODE_13_length_150539_cov_10.1785, whole genome shotgun sequence (150539 bp)
Overview 1 RT 1: 111209-118019 bp Neighborhood of RT #1 [111209, 118216] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 111209-112036 bp Ori: PCC03649.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 111239-111953 bp Feature: domain Description: ABC_phnC Location: 1112 39-111953 bp Feature: gene Location: 112379-112889 bp Feature: domain Description: DUF772 Location: 112529-112724 bp Feature: domain Description: DUF772 Location: 112 52 9-112 72 4 bp Feature: gene Location: 113409-114677 bp Ori: PCC03650.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113622-114279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11362 2 -1142 79 bp Feature: domain Description: GIIM Note: maturase Location: 114357-114579 bp Feature: domain Description: GIIM Note: maturase Location: 114357-114579 bp Feature: gene Location: 114827-115153 bp Feature: gene Location: 116672-118216 bp Ori: PCC03651.1 Feature: domain Description: CHD Location: 116888-117302 bp Feature: domain Description: CHD Location: 116888-117302 bp Feature: domain Description: CHD Location: 117530-118019 bp Feature: domain Description: CHD Location: 117530-118019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NRGM01000028.1 Pseudomonas aeruginosa strain env051b NODE_28_length_84731_cov_10.7485, whole genome shotgun sequence (84731 bp)
Overview 1 RT 1: 47929-51467 bp Neighborhood of RT #1 [47929, 51467] RVT-UG17 SLATT_5 Feature: gene Location: 47929-48354 bp Feature: gene Location: 48371-48841 bp Feature: gene Location: 48883-50247 bp Ori: PCC01927.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 49111-49714 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 49111-49714 bp Feature: gene Location: 50244-50786 bp Ori: PCC01928.1 Feature: domain Description: SLATT_5 Location: 50250-50760 bp Feature: domain Description: SLATT_5 Location: 50250-50760 bp Feature: gene Location: 51147-51467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: NRGM01000006.1 Pseudomonas aeruginosa strain env051b NODE_6_length_231099_cov_10.0542, whole genome shotgun sequence (231099 bp)
Overview 1 RT 1: 146040-156346 bp 2 RT 2: 172604-180786 bp Neighborhood of RT #1 [146040, 156348] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172604, 180800] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 146040-147161 bp Ori: PCC04890.1 Feature: domain Description: COG3177 Location: 146058-147150 bp Feature: domain Description: COG3177 Location: 14 6058-14 7150 bp Feature: gene Location: 147420-147557 bp Feature: gene Location: 147885-149570 bp Ori: PCC04892.1 Gene: ltrA Feature: domain Description: RVT_N Location: 147942-148182 bp Feature: domain Description: RVT_N Location: 14 794 2-14 8182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148230-148866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 8230-14 8866 bp Feature: domain Description: GIIM Note: maturase Location: 148920-149151 bp Feature: domain Description: GIIM Note: maturase Location: 14 8920-14 9151 bp Feature: domain Description: HNH Note: nucleases Location: 149403-149541 bp Feature: domain Description: HNH Note: nucleases Location: 14 94 03-14 954 1 bp Feature: gene Location: 150651-154388 bp Ori: PCC04893.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 150759-151416 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150759-1514 16 bp Feature: domain Description: PRK09776 Location: 151629-152100 bp Feature: domain Description: PRK09776 Location: 151629-152100 bp Feature: domain Description: PAS Location: 152190-152682 bp Feature: domain Description: PAS Location: 152190-152682 bp Feature: domain Description: PRK10060 Location: 152691-154338 bp Feature: domain Description: PRK10060 Location: 152691-154 338 bp Feature: gene Location: 154495-156348 bp Ori: PCC04894.1 Feature: domain Description: PRK05658 Location: 154507-156346 bp Feature: domain Description: PRK05658 Location: 154 507-15634 6 bp Feature: gene Location: 172604-173896 bp Ori: PCC04912.1 Feature: domain Description: PRK10770 Location: 172694-173888 bp Feature: domain Description: PRK10770 Location: 172694 -173888 bp Feature: gene Location: 173877-176666 bp Ori: PCC04913.1 Feature: domain Description: LptD Location: 174072-176652 bp Feature: domain Description: LptD Location: 174 072-176652 bp Feature: gene Location: 176799-178511 bp Ori: PCC04914.1 Gene: ltrA Feature: domain Description: RVT_N Location: 176856-177099 bp Feature: domain Description: RVT_N Location: 176856-177099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177144-177780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17714 4 -177780 bp Feature: domain Description: YkfC Location: 177990-178140 bp Feature: domain Description: YkfC Location: 177990-17814 0 bp Feature: domain Description: HNH Note: nucleases Location: 178317-178455 bp Feature: domain Description: HNH Note: nucleases Location: 178317-1784 55 bp Feature: gene Location: 178699-178911 bp Feature: gene Location: 179784-180800 bp Ori: PCC04915.1 Feature: domain Description: COG3178 Location: 179787-180786 bp Feature: domain Description: COG3178 Location: 179787-180786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )