myRT

myRT report for GCA_002332175.1_ASM233217v1

Download annotations/find similar RTs

Seq: NRGN01000037.1 Pseudomonas aeruginosa strain env092a NODE_37_length_52332_cov_8.85567, whole genome shotgun sequence (52332 bp)
Overview 1 RT 1: 1-5461 bp Neighborhood of RT #1 [1, 5658] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 1-331 bp Feature: domain Description: DUF772 Location: 4-166 bp Feature: domain Description: DUF772 Location: 4-1 66 bp Feature: gene Location: 851-2119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064-1721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 064-1 721 bp Feature: domain Description: GIIM Note: maturase Location: 1799-2021 bp Feature: domain Description: GIIM Note: maturase Location: 1 799-2021 bp Feature: gene Location: 2269-2595 bp Feature: gene Location: 4114-5658 bp Feature: domain Description: CHD Location: 4330-4744 bp Feature: domain Description: CHD Location: 4330-4744 bp Feature: domain Description: CHD Location: 4972-5461 bp Feature: domain Description: CHD Location: 4972-5461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: NRGN01000004.1 Pseudomonas aeruginosa strain env092a NODE_4_length_378770_cov_8.05075, whole genome shotgun sequence (378770 bp)
Overview 1 RT 1: 291879-302185 bp 2 RT 2: 318444-326620 bp Neighborhood of RT #1 [291879, 302187] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318444, 326634] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 291879-293000 bp Feature: domain Description: COG3177 Location: 291897-292989 bp Feature: domain Description: COG3177 Location: 2 91897-2 92 989 bp Feature: gene Location: 293259-293396 bp Feature: gene Location: 293724-295409 bp Feature: RT Description: RVT_N Location: 293781-294021 bp Feature: RT Description: RVT_N Location: 2 93781-2 9402 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294069-294705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94069-2 94705 bp Feature: domain Description: GIIM Note: maturase Location: 294759-294990 bp Feature: domain Description: GIIM Note: maturase Location: 2 94759-2 94990 bp Feature: domain Description: HNH Note: nucleases Location: 295242-295380 bp Feature: domain Description: HNH Note: nucleases Location: 2 952 42 -2 95380 bp Feature: gene Location: 296490-300227 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296598-297255 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 96598-2 972 55 bp Feature: domain Description: PRK09776 Location: 297468-297939 bp Feature: domain Description: PRK09776 Location: 2 97468-2 97939 bp Feature: domain Description: PAS Location: 297996-298521 bp Feature: domain Description: PAS Location: 2 97996-2 9852 1 bp Feature: domain Description: PRK10060 Location: 298530-300177 bp Feature: domain Description: PRK10060 Location: 2 98530-300177 bp Feature: gene Location: 300334-302187 bp Feature: domain Description: PRK05658 Location: 300346-302185 bp Feature: domain Description: PRK05658 Location: 300346-302 185 bp Feature: gene Location: 318444-319736 bp Feature: domain Description: PRK10770 Location: 318534-319728 bp Feature: domain Description: PRK10770 Location: 318534-31972 8 bp Feature: gene Location: 319717-322500 bp Feature: domain Description: LptD Location: 319912-322486 bp Feature: domain Description: LptD Location: 319912 -32 2 486 bp Feature: gene Location: 322633-324345 bp Feature: RT Description: RVT_N Location: 322690-322933 bp Feature: RT Description: RVT_N Location: 32 2 690-32 2 933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322978-323614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 978-32 3614 bp Feature: domain Description: YkfC Location: 323821-323974 bp Feature: domain Description: YkfC Location: 32 382 1-32 3974 bp Feature: domain Description: HNH Note: nucleases Location: 324151-324289 bp Feature: domain Description: HNH Note: nucleases Location: 32 4151-32 42 89 bp Feature: gene Location: 324533-324745 bp Feature: gene Location: 325618-326634 bp Feature: domain Description: COG3178 Location: 325621-326620 bp Feature: domain Description: COG3178 Location: 32 562 1-32 662 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )