myRT

myRT report for GCA_002332225.1_ASM233222v1

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Seq: NRGX01000001.1 Brevibacterium aurantiacum strain JB5 SAMN07141170.11, whole genome shotgun sequence (4310614 bp)
Overview 1 RT 1: 88590-92698 bp 2 RT 2: 118714-124737 bp 3 RT 3: 217164-221081 bp 4 RT 4: 1389764-1393395 bp 5 RT 5: 3803972-3809535 bp Neighborhood of RT #1 [88590, 92769] InsE RVT-GII GIIM PHA02517 Phage_int_SAM_1 INT_RitC_C_like Neighborhood of RT #2 [118714, 124751] MdlB PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [217164, 221095] HTH_Tnp_1 RVT-GII InsE Neighborhood of RT #4 [1389764, 1393574] InsE RVT-GII GIIM PHA02517 DDE_Tnp_1 Neighborhood of RT #5 [3803972, 3809535] siderophore_interacting PHA02517 RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 88590-88781 bp Feature: domain Description: InsE Location: 88611-88767 bp Feature: domain Description: InsE Location: 8861 1 -88767 bp Feature: gene Location: 88904-89182 bp Feature: gene Location: 89935-91368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90256-90943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90256-90943 bp Feature: domain Description: GIIM Note: maturase Location: 91018-91243 bp Feature: domain Description: GIIM Note: maturase Location: 91 01 8-91 243 bp Feature: gene Location: 91503-91697 bp Feature: domain Description: PHA02517 Location: 91506-91668 bp Feature: domain Description: PHA0251 7 Location: 91 506-91 668 bp Feature: gene Location: 91744-92769 bp Feature: domain Description: Phage_int_SAM_1 Location: 91810-92059 bp Feature: domain Description: Phage_int_SAM_1 Location: 91 81 0-92059 bp Feature: domain Description: INT_RitC_C_like Location: 92140-92698 bp Feature: domain Description: INT_RitC_C_like Location: 921 40-92698 bp Feature: gene Location: 118714-120540 bp Feature: domain Description: MdlB Location: 118771-120514 bp Feature: domain Description: MdlB Location: 1 1 8771 -1 2051 4 bp Feature: gene Location: 121392-121865 bp Feature: domain Description: PHA02517 Location: 121407-121836 bp Feature: domain Description: PHA0251 7 Location: 1 21 407-1 21 836 bp Feature: gene Location: 121973-123406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122294-122981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 22294-1 22981 bp Feature: domain Description: GIIM Note: maturase Location: 123056-123281 bp Feature: domain Description: GIIM Note: maturase Location: 1 23056-1 23281 bp Feature: gene Location: 124159-124437 bp Feature: gene Location: 124560-124751 bp Feature: domain Description: InsE Location: 124581-124737 bp Feature: domain Description: InsE Location: 1 24581 -1 24737 bp Feature: gene Location: 217164-217482 bp Feature: domain Description: HTH_Tnp_1 Location: 217203-217434 bp Feature: domain Description: HTH_Tnp_1 Location: 21 7203-21 7434 bp Feature: gene Location: 217482-218548 bp Feature: gene Location: 218557-219750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218878-219565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8878-21 9565 bp Feature: gene Location: 220503-220781 bp Feature: gene Location: 220904-221095 bp Feature: domain Description: InsE Location: 220925-221081 bp Feature: domain Description: InsE Location: 220925-221 081 bp Feature: gene Location: 1389764-1389955 bp Feature: domain Description: InsE Location: 1389785-1389941 bp Feature: domain Description: InsE Location: 1 389785-1 389941 bp Feature: gene Location: 1390078-1390356 bp Feature: gene Location: 1391109-1392542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391430-1392117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 391 430-1 3921 1 7 bp Feature: domain Description: GIIM Note: maturase Location: 1392192-1392417 bp Feature: domain Description: GIIM Note: maturase Location: 1 3921 92-1 39241 7 bp Feature: gene Location: 1392650-1393123 bp Feature: domain Description: PHA02517 Location: 1392665-1393094 bp Feature: domain Description: PHA0251 7 Location: 1 392665-1 393094 bp Feature: gene Location: 1393158-1393574 bp Feature: domain Description: DDE_Tnp_1 Location: 1393185-1393395 bp Feature: domain Description: DDE_Tnp_1 Location: 1 3931 85-1 393395 bp Feature: gene Location: 3803972-3804865 bp Feature: domain Description: siderophore_interacting Location: 3804044-3804743 bp Feature: domain Description: siderophore_interacting Location: 3804044-3804743 bp Feature: gene Location: 3805912-3806385 bp Feature: domain Description: PHA02517 Location: 3805927-3806356 bp Feature: domain Description: PHA0251 7 Location: 3805927-3806356 bp Feature: gene Location: 3806493-3807926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3806814-3807501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380681 4-3807501 bp Feature: domain Description: GIIM Note: maturase Location: 3807576-3807801 bp Feature: domain Description: GIIM Note: maturase Location: 3807576-3807801 bp Feature: gene Location: 3809535-3809853 bp Feature: domain Description: HTH_Tnp_1 Location: 3809574-3809805 bp Feature: domain Description: HTH_Tnp_1 Location: 3809574-3809805 bp Feature: gene Location: 3808469-3809535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), MdlB (COG1132), HTH_Tnp_1 (pfam01527), DDE_Tnp_1 (pfam01609), siderophore_interacting (cd06193)