myRT

myRT report for GCA_002332325.1_ASM233232v1

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Seq: NRGQ01000007.1 Brevibacterium aurantiacum strain 962_8 SAMN07141156.107, whole genome shotgun sequence (264335 bp)
Overview 1 RT 1: 11-10948 bp Neighborhood of RT #1 [11, 12609] QOR2 RVT-UG7 UvrD UvrD YprA YprA YprA DUF1998 Feature: gene Location: 11-859 bp Feature: domain Description: QOR2 Location: 20-854 bp Feature: domain Description: QOR2 Location: 20-854 bp Feature: gene Location: 1400-1600 bp Feature: gene Location: 1716-3350 bp Ori: PCC43156.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2163-2589 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21 63-2589 bp Feature: gene Location: 3347-5755 bp Ori: PCC43370.1 Feature: domain Description: UvrD Location: 4262-5447 bp Feature: domain Description: UvrD Location: 4262-5447 bp Feature: domain Description: UvrD Location: 5534-5735 bp Feature: domain Description: UvrD Location: 5534-5735 bp Feature: gene Location: 5812-12609 bp Ori: PCC43157.1 Feature: domain Description: YprA Location: 5833-6790 bp Feature: domain Description: YprA Location: 5833-6790 bp Feature: domain Description: YprA Location: 7759-8284 bp Feature: domain Description: YprA Location: 7759-8284 bp Feature: domain Description: YprA Location: 9115-9292 bp Feature: domain Description: YprA Location: 91 1 5-9292 bp Feature: domain Description: DUF1998 Location: 10699-10948 bp Feature: domain Description: DUF1 998 Location: 1 0699-1 0948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QOR2 (cd05286), RVT-UG7, UvrD (COG0210), YprA (COG1205), DUF1998 (pfam09369)

Seq: NRGQ01000005.1 Brevibacterium aurantiacum strain 962_8 SAMN07141156.105, whole genome shotgun sequence (457904 bp)
Overview 1 RT 1: 197330-203037 bp Neighborhood of RT #1 [197330, 203165] HTD2 mesacon_CoA_iso RVT-UG22 DEDD_Tnp_IS110 DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 197330-198199 bp Ori: PCC43884.1 Feature: domain Description: HTD2 Location: 197333-198185 bp Feature: domain Description: HTD2 Location: 197333-198185 bp Feature: gene Location: 198209-199405 bp Ori: PCC43885.1 Feature: domain Description: mesacon_CoA_iso Location: 198236-199376 bp Feature: domain Description: mesacon_CoA_iso Location: 1982 36-199376 bp Feature: gene Location: 199741-201231 bp Ori: PCC43886.1 Feature: RT Description: RVT-UG22 Note: UG22 RT Location: 199957-200473 bp Feature: RT Description: RVT-UG2 2 Note: UG2 2 RT Location: 199957-2 00473 bp Feature: gene Location: 201221-201766 bp Feature: gene Location: 202098-203165 bp Ori: PCC43888.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 202134-202566 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 02 134-2 02 566 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 202623-202785 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 02 62 3-2 02 785 bp Feature: domain Description: Transposase_20 Location: 202791-203037 bp Feature: domain Description: Transposase_2 0 Location: 2 02 791-2 03037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTD2 (COG3777), mesacon_CoA_iso (TIGR04253), RVT-UG22, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: NRGQ01000066.1 Brevibacterium aurantiacum strain 962_8 SAMN07141156.174, whole genome shotgun sequence (2161 bp)
Overview 1 RT 1: 621-1929 bp Neighborhood of RT #1 [621, 2054] RVT-GII GIIM Feature: gene Location: 621-2054 bp Ori: PCC41149.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1629 bp Feature: domain Description: GIIM Note: maturase Location: 1704-1929 bp Feature: domain Description: GIIM Note: maturase Location: 1704-1929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)