myRT

myRT report for GCA_002332525.1_ASM233252v1

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Seq: DDAG01000018.1 TPA_asm: Pseudomonas stutzeri isolate UBA2064 UBA2064_contig_1, whole genome shotgun sequence (652998 bp)
Overview 1 RT 1: 388211-393580 bp Neighborhood of RT #1 [388211, 393585] lipid_A_lpxH PRK10791 RVT-GII GIIM HNHc PRK05347 Feature: gene Location: 388211-388933 bp Feature: domain Description: lipid_A_lpxH Location: 388220-388904 bp Feature: domain Description: lipid_A_lpxH Location: 388220-388904 bp Feature: gene Location: 388940-389434 bp Feature: domain Description: PRK10791 Location: 388943-389429 bp Feature: domain Description: PRK1 0791 Location: 388943-389429 bp Feature: gene Location: 390630-391229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390633-391005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390633-391 005 bp Feature: gene Location: 391198-391743 bp Feature: domain Description: GIIM Note: maturase Location: 391204-391312 bp Feature: domain Description: GIIM Note: maturase Location: 391 204-391 31 2 bp Feature: domain Description: HNHc Note: nucleases Location: 391540-391696 bp Feature: domain Description: HNHc Note: nucleases Location: 391 540-391 696 bp Feature: gene Location: 391756-393585 bp Feature: domain Description: PRK05347 Location: 391933-393580 bp Feature: domain Description: PRK05347 Location: 391 933-393580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipid_A_lpxH (TIGR01854), PRK10791 (peptidylprolyl isomerase B), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05347 (glutaminyl-tRNA synthetase; Provisional)

Seq: DDAG01000005.1 TPA_asm: Pseudomonas stutzeri isolate UBA2064 UBA2064_contig_2, whole genome shotgun sequence (545337 bp)
Overview 1 RT 1: 452397-456960 bp 2 RT 2: 505881-514165 bp Neighborhood of RT #1 [452397, 456960] RVT-UG5 nitrilase DNA_BRE_C Neighborhood of RT #2 [505881, 514182] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 Feature: gene Location: 452397-455420 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 452883-453360 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 452 883-453360 bp Feature: domain Description: nitrilase Location: 454626-455316 bp Feature: domain Description: nitrilase Location: 45462 6-455316 bp Feature: gene Location: 455639-456403 bp Feature: domain Description: DNA_BRE_C Location: 455813-456206 bp Feature: domain Description: DNA_BRE_C Location: 455813-4562 06 bp Feature: gene Location: 456601-456960 bp Feature: gene Location: 505881-507077 bp Feature: domain Description: PRK10770 Location: 505887-507069 bp Feature: domain Description: PRK10770 Location: 505887-507069 bp Feature: gene Location: 507169-509997 bp Feature: domain Description: LptD Location: 507538-509980 bp Feature: domain Description: LptD Location: 507538-509980 bp Feature: gene Location: 510108-511814 bp Feature: domain Description: RVT_N Location: 510165-510405 bp Feature: domain Description: RVT_N Location: 510165-510405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510453-511086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510453-511086 bp Feature: domain Description: GIIM Note: maturase Location: 511140-511374 bp Feature: domain Description: GIIM Note: maturase Location: 511140-511374 bp Feature: domain Description: HNH Note: nucleases Location: 511626-511758 bp Feature: domain Description: HNH Note: nucleases Location: 51162 6-511758 bp Feature: gene Location: 511931-512086 bp Feature: gene Location: 513124-514182 bp Feature: domain Description: COG3178 Location: 513172-514165 bp Feature: domain Description: COG3178 Location: 513172 -514165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), DNA_BRE_C (cl00213), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: DDAG01000019.1 TPA_asm: Pseudomonas stutzeri isolate UBA2064 UBA2064_contig_3, whole genome shotgun sequence (729525 bp)
Overview 1 RT 1: 113527-121672 bp Neighborhood of RT #1 [113527, 121866] DUF262 YeeA YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 113527-115398 bp Feature: domain Description: DUF262 Location: 113575-114343 bp Feature: domain Description: DUF262 Location: 113 575-1143 43 bp Feature: gene Location: 115402-117153 bp Feature: domain Description: YeeA Location: 115453-115549 bp Feature: domain Description: YeeA Location: 115453 -115549 bp Feature: domain Description: YeeA Location: 116188-117019 bp Feature: domain Description: YeeA Location: 116188-117019 bp Feature: gene Location: 117150-120170 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 117645-118116 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 117645-118116 bp Feature: gene Location: 120167-120724 bp Feature: gene Location: 120724-121866 bp Feature: domain Description: AAA_21 Location: 120796-120862 bp Feature: domain Description: AAA_21 Location: 120796-120862 bp Feature: domain Description: AAA_21 Location: 121474-121672 bp Feature: domain Description: AAA_21 Location: 121474-121672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: DDAG01000023.1 TPA_asm: Pseudomonas stutzeri isolate UBA2064 UBA2064_contig_6, whole genome shotgun sequence (172271 bp)
Overview 1 RT 1: 10744-17164 bp Neighborhood of RT #1 [10744, 17175] PRK08665 NrdJ_Z RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 10744-11451 bp Feature: domain Description: PRK08665 Location: 10837-11449 bp Feature: domain Description: PRK08665 Location: 10837-114 4 9 bp Feature: gene Location: 11513-13663 bp Feature: domain Description: NrdJ_Z Location: 11597-13493 bp Feature: domain Description: NrdJ_Z Location: 11597-134 93 bp Feature: gene Location: 13927-15633 bp Feature: domain Description: RVT_N Location: 13984-14224 bp Feature: domain Description: RVT_N Location: 13984 -14 224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14272-14908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 272-14 908 bp Feature: domain Description: YkfC Location: 15130-15259 bp Feature: domain Description: YkfC Location: 15130-15259 bp Feature: domain Description: HNHc Note: nucleases Location: 15403-15577 bp Feature: domain Description: HNHc Note: nucleases Location: 154 03-15577 bp Feature: gene Location: 16835-16990 bp Feature: domain Description: rpmG Location: 16838-16982 bp Feature: domain Description: rpmG Location: 16838-16982 bp Feature: gene Location: 17002-17175 bp Feature: domain Description: RpmB Location: 17005-17164 bp Feature: domain Description: RpmB Location: 17005-17164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08665 (vitamin B12-dependent ribonucleotide reductase), NrdJ_Z (TIGR02504), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227)