myRT

myRT report for GCA_002332765.1_ASM233276v1

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Seq: DDBQ01000140.1 TPA_asm: Clostridiales bacterium UBA2028 UBA2028_contig_175, whole genome shotgun sequence (44705 bp)
Overview 1 RT 1: 1274-5480 bp Neighborhood of RT #1 [1274, 5485] AAA_15 RVT-GII RVT-GII GIIM OmpR Feature: gene Location: 1274-1867 bp Feature: domain Description: AAA_15 Location: 1280-1769 bp Feature: domain Description: AAA_1 5 Location: 1 280-1 769 bp Feature: gene Location: 2425-2658 bp Feature: gene Location: 3015-3395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3084-3390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3084-3390 bp Feature: gene Location: 3519-4079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3540-3717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3540-371 7 bp Feature: domain Description: GIIM Note: maturase Location: 3804-4014 bp Feature: domain Description: GIIM Note: maturase Location: 3804-401 4 bp Feature: gene Location: 4180-4584 bp Feature: gene Location: 4793-5485 bp Feature: domain Description: OmpR Location: 4802-5480 bp Feature: domain Description: OmpR Location: 4802-5480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-GII, GIIM (pfam08388), OmpR (COG0745)

Seq: DDBQ01000161.1 TPA_asm: Clostridiales bacterium UBA2028 UBA2028_contig_8, whole genome shotgun sequence (22714 bp)
Overview 1 RT 1: 11976-16082 bp Neighborhood of RT #1 [11976, 16213] RVT-UG26 HpnR_B12_rSAM HpnR_B12_rSAM YgiQ Feature: gene Location: 11976-12161 bp Feature: gene Location: 12211-12495 bp Feature: gene Location: 12488-13438 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 12494-13028 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 12 494-1302 8 bp Feature: gene Location: 13539-14819 bp Feature: domain Description: HpnR_B12_rSAM Location: 13542-13860 bp Feature: domain Description: HpnR_B12 _rSAM Location: 13542 -13860 bp Feature: domain Description: HpnR_B12_rSAM Location: 13971-14682 bp Feature: domain Description: HpnR_B12 _rSAM Location: 13971-14682 bp Feature: gene Location: 14903-16213 bp Feature: domain Description: YgiQ Location: 15080-16082 bp Feature: domain Description: YgiQ Location: 15080-16082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, HpnR_B12_rSAM (TIGR04367), YgiQ (COG1032)