myRT

myRT report for GCA_002335265.1_ASM233526v1

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Seq: DDCI01000026.1 TPA_asm: Cupriavidus sp. UBA2010 UBA2010_contig_14, whole genome shotgun sequence (140084 bp)
Overview 1 RT 1: 20-3390 bp Neighborhood of RT #1 [20, 3449] RVT-GII GIIM IS5 COG3547 Feature: gene Location: 20-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188-845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88-845 bp Feature: domain Description: GIIM Note: maturase Location: 923-1145 bp Feature: domain Description: GIIM Note: maturase Location: 923-1 1 45 bp Feature: gene Location: 1691-2230 bp Feature: domain Description: IS5 Location: 1880-2207 bp Feature: domain Description: IS5 Location: 1 880-2207 bp Feature: gene Location: 2424-3449 bp Feature: domain Description: COG3547 Location: 2439-3390 bp Feature: domain Description: COG3547 Location: 2439-3390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: DDCI01000033.1 TPA_asm: Cupriavidus sp. UBA2010 UBA2010_contig_333, whole genome shotgun sequence (570382 bp)
Overview 1 RT 1: 226070-235810 bp Neighborhood of RT #1 [226070, 235824] ileS PRK05627 RVT_N RVT-GII GIIM HNHc BaeS PRK15347 CitB Feature: gene Location: 226070-228949 bp Feature: domain Description: ileS Location: 226103-228917 bp Feature: domain Description: ileS Location: 2 2 6103-2 2 8917 bp Feature: gene Location: 229069-230106 bp Feature: domain Description: PRK05627 Location: 229132-230044 bp Feature: domain Description: PRK0562 7 Location: 2 2 9132 -2 30044 bp Feature: gene Location: 230176-231876 bp Feature: RT Description: RVT_N Location: 230233-230476 bp Feature: RT Description: RVT_N Location: 2 302 33-2 30476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230521-231169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3052 1-2 31169 bp Feature: domain Description: GIIM Note: maturase Location: 231226-231454 bp Feature: domain Description: GIIM Note: maturase Location: 2 312 2 6-2 31454 bp Feature: domain Description: HNHc Note: nucleases Location: 231679-231838 bp Feature: domain Description: HNHc Note: nucleases Location: 2 31679-2 31838 bp Feature: gene Location: 233309-235099 bp Feature: domain Description: BaeS Location: 233552-234659 bp Feature: domain Description: BaeS Location: 2 33552 -2 34659 bp Feature: domain Description: PRK15347 Location: 234743-235067 bp Feature: domain Description: PRK15347 Location: 2 34743-2 35067 bp Feature: gene Location: 235165-235824 bp Feature: domain Description: CitB Location: 235189-235810 bp Feature: domain Description: CitB Location: 2 35189-2 35810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ileS (TIGR00392), PRK05627 (bifunctional riboflavin kinase/FAD synthetase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), BaeS (COG0642), PRK15347 (two component system sensor kinase), CitB (TIGR02484)

Seq: DDCI01000004.1 TPA_asm: Cupriavidus sp. UBA2010 UBA2010_contig_553, whole genome shotgun sequence (58051 bp)
Overview 1 RT 1: 54028-57040 bp Neighborhood of RT #1 [54028, 57261] IS5 RVT_N RVT-GII GIIM Feature: gene Location: 54028-54849 bp Feature: gene Location: 55225-55647 bp Feature: domain Description: IS5 Location: 55231-55621 bp Feature: domain Description: IS5 Location: 5523 1-55621 bp Feature: gene Location: 55756-57261 bp Feature: RT Description: RVT_N Location: 55834-56068 bp Feature: RT Description: RVT_N Location: 5583 4-56068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56113-56755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56113 -56755 bp Feature: domain Description: GIIM Note: maturase Location: 56806-57040 bp Feature: domain Description: GIIM Note: maturase Location: 56806-57040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)