myRT

myRT report for GCA_002335465.1_Solivochromogenes3561_assembly01

Download annotations/find similar RTs

Seq: BDQI01000045.1 Streptomyces olivochromogenes NBRC 3561 DNA, contig: NODE_45_L60738_C24, whole genome shotgun sequence (60738 bp)
Overview 1 RT 1: 46134-51767 bp Neighborhood of RT #1 [46134, 51802] Acetyltransf_1 PLPDE_III_ODC RVT-GII SCAD_SBCAD Feature: gene Location: 46134-46691 bp Feature: domain Description: Acetyltransf_1 Location: 46176-46542 bp Feature: domain Description: Acetyltransf_1 Location: 461 76-46542 bp Feature: gene Location: 46688-48007 bp Feature: domain Description: PLPDE_III_ODC Location: 46871-47969 bp Feature: domain Description: PLPDE_III_ODC Location: 46871 -47969 bp Feature: gene Location: 48322-48750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48328-48670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48328-48670 bp Feature: gene Location: 49546-50664 bp Feature: gene Location: 50633-51802 bp Feature: domain Description: SCAD_SBCAD Location: 50672-51767 bp Feature: domain Description: SCAD_SBCAD Location: 50672-51 767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), PLPDE_III_ODC (cd00622), RVT-GII, SCAD_SBCAD (cd01158)

Seq: BDQI01000051.1 Streptomyces olivochromogenes NBRC 3561 DNA, contig: NODE_51_L40257_C13, whole genome shotgun sequence (40257 bp)
Overview 1 RT 1: 33506-37209 bp Neighborhood of RT #1 [33506, 37209] DUF4096 RVT-GII GIIM YkfC Feature: gene Location: 33506-33637 bp Feature: gene Location: 34099-34332 bp Feature: domain Description: DUF4096 Location: 34138-34327 bp Feature: domain Description: DUF4096 Location: 34138-3432 7 bp Feature: gene Location: 34525-35580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34528-35155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452 8-35155 bp Feature: domain Description: GIIM Note: maturase Location: 35227-35461 bp Feature: domain Description: GIIM Note: maturase Location: 352 2 7-35461 bp Feature: gene Location: 35678-35950 bp Feature: domain Description: YkfC Location: 35726-35909 bp Feature: domain Description: YkfC Location: 3572 6-35909 bp Feature: gene Location: 37006-37209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), RVT-GII, GIIM (pfam08388), YkfC (COG3344)

Seq: BDQI01000037.1 Streptomyces olivochromogenes NBRC 3561 DNA, contig: NODE_37_L76989_C11, whole genome shotgun sequence (76989 bp)
Overview 1 RT 1: 29892-34329 bp Neighborhood of RT #1 [29892, 34329] RVT_N RVT-GII GIIM HNH Feature: gene Location: 29892-30173 bp Feature: gene Location: 30589-31038 bp Feature: gene Location: 31883-33622 bp Feature: RT Description: RVT_N Location: 31934-32177 bp Feature: RT Description: RVT_N Location: 3 193 4-3 2177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32231-32888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 223 1-3 2888 bp Feature: domain Description: GIIM Note: maturase Location: 32945-33173 bp Feature: domain Description: GIIM Note: maturase Location: 3 2945-3 3 173 bp Feature: domain Description: HNH Note: nucleases Location: 33497-33599 bp Feature: domain Description: HNH Note: nucleases Location: 3 3 497-3 3 599 bp Feature: gene Location: 33743-33961 bp Feature: gene Location: 34111-34329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)