myRT

myRT report for GCA_002338045.1_ASM233804v1

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Seq: DDHI01000257.1 TPA_asm: Massilia sp. UBA1880 UBA1880_contig_68, whole genome shotgun sequence (42939 bp)
Overview 1 RT 1: 12246-17752 bp Neighborhood of RT #1 [12246, 17814] RpmB PRK00024 RVT_N RVT-GII YkfC HNH SlpA ispH Feature: gene Location: 12246-12482 bp Feature: domain Description: RpmB Location: 12249-12471 bp Feature: domain Description: RpmB Location: 1 2249-1 2471 bp Feature: gene Location: 12703-13374 bp Feature: domain Description: PRK00024 Location: 12709-13369 bp Feature: domain Description: PRK00024 Location: 1 2709-1 3369 bp Feature: gene Location: 14560-16260 bp Feature: RT Description: RVT_N Location: 14617-14860 bp Feature: RT Description: RVT_N Location: 1 461 7-1 4860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14905-15553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4905-1 5553 bp Feature: domain Description: YkfC Location: 15640-15913 bp Feature: domain Description: YkfC Location: 1 5640-1 591 3 bp Feature: domain Description: HNH Note: nucleases Location: 16090-16228 bp Feature: domain Description: HNH Note: nucleases Location: 1 6090-1 6228 bp Feature: gene Location: 16364-16837 bp Feature: domain Description: SlpA Location: 16409-16832 bp Feature: domain Description: SlpA Location: 1 6409-1 6832 bp Feature: gene Location: 16852-17814 bp Feature: domain Description: ispH Location: 16867-17752 bp Feature: domain Description: ispH Location: 1 6867-1 7752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SlpA (COG1047), ispH (PRK01045)