myRT

myRT report for GCA_002339275.1_ASM233927v1

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Seq: DDKE01000032.1 TPA_asm: Enterobacteriaceae bacterium UBA2606 UBA2606_contig_107, whole genome shotgun sequence (217946 bp)
Overview 1 RT 1: 48784-58092 bp Neighborhood of RT #1 [48784, 58103] WGR_DNA_ligase RVT-Retrons BaeS PRK10722 Feature: gene Location: 48784-51798 bp Feature: domain Description: WGR_DNA_ligase Location: 48799-49030 bp Feature: domain Description: WGR_DNA_ligase Location: 48799-49030 bp Feature: gene Location: 51788-53410 bp Feature: gene Location: 53729-55429 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54281-54893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54281 -54893 bp Feature: gene Location: 55936-57372 bp Feature: domain Description: BaeS Location: 56395-57358 bp Feature: domain Description: BaeS Location: 56395-57358 bp Feature: gene Location: 57384-58103 bp Feature: domain Description: PRK10722 Location: 57423-58092 bp Feature: domain Description: PRK1 0722 Location: 57423-58092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons, BaeS (COG0642), PRK10722 (two-component system QseEF-associated lipoprotein QseG)

Seq: DDKE01000018.1 TPA_asm: Enterobacteriaceae bacterium UBA2606 UBA2606_contig_131, whole genome shotgun sequence (34218 bp)
Overview 1 RT 1: 395-3433 bp Neighborhood of RT #1 [395, 3474] RVT-Retrons HicB PRK13605 Feature: gene Location: 395-568 bp Feature: gene Location: 1004-1942 bp Feature: gene Location: 1932-2843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2031-2610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 031-2 610 bp Feature: gene Location: 2871-3062 bp Feature: domain Description: HicB Location: 2919-3033 bp Feature: domain Description: HicB Location: 2 919-3033 bp Feature: gene Location: 3187-3474 bp Feature: domain Description: PRK13605 Location: 3229-3433 bp Feature: domain Description: PRK13605 Location: 32 2 9-3433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HicB (pfam05534), PRK13605 (endoribonuclease SymE; Provisional)

Seq: DDKE01000020.1 TPA_asm: Enterobacteriaceae bacterium UBA2606 UBA2606_contig_152, whole genome shotgun sequence (218120 bp)
Overview 1 RT 1: 74175-81330 bp Neighborhood of RT #1 [74175, 81332] groEL RVT_N RVT-GII GIIM HNHc DUF4156 PRK15048 Feature: gene Location: 74175-75821 bp Feature: domain Description: groEL Location: 74181-75807 bp Feature: domain Description: groEL Location: 74181-75807 bp Feature: gene Location: 76169-76486 bp Feature: gene Location: 76883-78613 bp Feature: RT Description: RVT_N Location: 76979-77213 bp Feature: RT Description: RVT_N Location: 76979-77213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77267-77912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77267-77912 bp Feature: domain Description: GIIM Note: maturase Location: 77966-78197 bp Feature: domain Description: GIIM Note: maturase Location: 77966-78197 bp Feature: domain Description: HNHc Note: nucleases Location: 78413-78563 bp Feature: domain Description: HNHc Note: nucleases Location: 78413 -78563 bp Feature: gene Location: 78958-79311 bp Feature: domain Description: DUF4156 Location: 79027-79303 bp Feature: domain Description: DUF4156 Location: 79027-793 03 bp Feature: gene Location: 79686-81332 bp Feature: domain Description: PRK15048 Location: 79914-81330 bp Feature: domain Description: PRK15048 Location: 79914-813 3 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698), PRK15048 (methyl-accepting chemotaxis protein II; Provisional)