myRT

myRT report for GCA_002340855.1_ASM234085v1

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Seq: DDNA01000123.1 TPA_asm: Alteromonas macleodii isolate UBA2532 UBA2532_contig_286, whole genome shotgun sequence (10628 bp)
Overview 1 RT 1: 410-5555 bp Neighborhood of RT #1 [410, 5587] groEL RVT_N RVT-GII GIIM HNHc DUF885 Feature: gene Location: 410-643 bp Feature: domain Description: groEL Location: 419-638 bp Feature: domain Description: groEL Location: 41 9-638 bp Feature: gene Location: 1703-3352 bp Feature: domain Description: RVT_N Location: 1754-1997 bp Feature: domain Description: RVT_N Location: 1 754-1 997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042-2687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042-2687 bp Feature: domain Description: GIIM Note: maturase Location: 2741-2972 bp Feature: domain Description: GIIM Note: maturase Location: 2741 -2972 bp Feature: domain Description: HNHc Note: nucleases Location: 3188-3344 bp Feature: domain Description: HNHc Note: nucleases Location: 31 88-3344 bp Feature: gene Location: 3428-3559 bp Feature: gene Location: 3764-5587 bp Feature: domain Description: DUF885 Location: 3926-5555 bp Feature: domain Description: DUF885 Location: 3926-5555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF885 (pfam05960)

Seq: DDNA01000204.1 TPA_asm: Alteromonas macleodii isolate UBA2532 UBA2532_contig_745, whole genome shotgun sequence (56904 bp)
Overview 1 RT 1: 50480-56892 bp Neighborhood of RT #1 [50480, 56903] DUF2971 group_II_RT_mat RVT-UG19 PRK05367 Feature: gene Location: 50480-51382 bp Feature: domain Description: DUF2971 Location: 50894-51161 bp Feature: domain Description: DUF2 971 Location: 50894-51161 bp Feature: gene Location: 51717-52358 bp Feature: gene Location: 52355-54040 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 52394-52652 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 52 394-52 652 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 52760-53231 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 52 760-532 31 bp Feature: gene Location: 54372-56903 bp Feature: domain Description: PRK05367 Location: 54375-56892 bp Feature: domain Description: PRK05367 Location: 54375-56892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), group_II_RT_mat (TIGR04416), RVT-UG19, PRK05367 (aminomethyl-transferring glycine dehydrogenase)

Seq: DDNA01000104.1 TPA_asm: Alteromonas macleodii isolate UBA2532 UBA2532_contig_819, whole genome shotgun sequence (32584 bp)
Overview 1 RT 1: 3454-7832 bp Neighborhood of RT #1 [3454, 7832] PinE RVT-UG9 PRK14975 Feature: gene Location: 3454-3636 bp Feature: gene Location: 3827-4240 bp Feature: domain Description: PinE Location: 3842-4229 bp Feature: domain Description: PinE Location: 3 842-4229 bp Feature: gene Location: 4299-5951 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 4521-5157 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 4521-5157 bp Feature: gene Location: 5944-7491 bp Feature: domain Description: PRK14975 Location: 6364-7435 bp Feature: domain Description: PRK14975 Location: 63 64-743 5 bp Feature: gene Location: 7509-7832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)