myRT

myRT report for GCA_002341065.1_ASM234106v1

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Seq: DDNG01000017.1 TPA_asm: Cupriavidus sp. UBA2526 UBA2526_contig_36, whole genome shotgun sequence (140048 bp)
Overview 1 RT 1: 20-3390 bp Neighborhood of RT #1 [20, 3449] RVT-GII GIIM IS5 COG3547 Feature: gene Location: 20-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188-845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88-845 bp Feature: domain Description: GIIM Note: maturase Location: 923-1145 bp Feature: domain Description: GIIM Note: maturase Location: 923-1 1 45 bp Feature: gene Location: 1691-2230 bp Feature: domain Description: IS5 Location: 1880-2207 bp Feature: domain Description: IS5 Location: 1 880-2207 bp Feature: gene Location: 2424-3449 bp Feature: domain Description: COG3547 Location: 2439-3390 bp Feature: domain Description: COG3547 Location: 2439-3390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: DDNG01000016.1 TPA_asm: Cupriavidus sp. UBA2526 UBA2526_contig_39, whole genome shotgun sequence (570778 bp)
Overview 1 RT 1: 334755-344477 bp Neighborhood of RT #1 [334755, 344509] CitB BaeS PRK15347 RVT_N RVT-GII GIIM HNHc PRK05627 ileS Feature: gene Location: 334755-335414 bp Feature: domain Description: CitB Location: 334779-335400 bp Feature: domain Description: CitB Location: 334779-335400 bp Feature: gene Location: 335480-337492 bp Feature: domain Description: BaeS Location: 335945-337049 bp Feature: domain Description: BaeS Location: 335945-337049 bp Feature: domain Description: PRK15347 Location: 337136-337460 bp Feature: domain Description: PRK15347 Location: 337136-337460 bp Feature: gene Location: 338703-340403 bp Feature: RT Description: RVT_N Location: 338760-339003 bp Feature: RT Description: RVT_N Location: 338760-339003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339048-339696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339048-339696 bp Feature: domain Description: GIIM Note: maturase Location: 339753-339981 bp Feature: domain Description: GIIM Note: maturase Location: 339753-339981 bp Feature: domain Description: HNHc Note: nucleases Location: 340206-340365 bp Feature: domain Description: HNHc Note: nucleases Location: 3402 06-340365 bp Feature: gene Location: 340479-341510 bp Feature: domain Description: PRK05627 Location: 340536-341448 bp Feature: domain Description: PRK0562 7 Location: 340536-341448 bp Feature: gene Location: 341630-344509 bp Feature: domain Description: ileS Location: 341663-344477 bp Feature: domain Description: ileS Location: 341663-344477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), BaeS (COG0642), PRK15347 (two component system sensor kinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05627 (bifunctional riboflavin kinase/FAD synthetase), ileS (TIGR00392)