myRT

myRT report for GCA_002342735.1_ASM234273v1

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Seq: DDQR01000056.1 TPA_asm: Vibrio sp. UBA2437 UBA2437_contig_1885, whole genome shotgun sequence (2506 bp)
Overview 1 RT 1: 1-2496 bp Neighborhood of RT #1 [1, 2504] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 1-2004 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 133-742 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 33-742 bp Feature: domain Description: Cas1_I-II-III Location: 1030-1963 bp Feature: domain Description: Cas1 _I-II-III Location: 1 030-1 963 bp Feature: gene Location: 2086-2247 bp Feature: gene Location: 2295-2504 bp Feature: domain Description: Cas2_I_II_III Location: 2304-2496 bp Feature: domain Description: Cas2_I_II_III Location: 2304-2496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: DDQR01000383.1 TPA_asm: Vibrio sp. UBA2437 UBA2437_contig_812, whole genome shotgun sequence (9687 bp)
Overview 1 RT 1: 1258-5972 bp Neighborhood of RT #1 [1258, 5972] AraC_binding AraC RVT-GII GIIM RVT_N RVT-GII COG3547 Feature: gene Location: 1258-2085 bp Feature: domain Description: AraC_binding Location: 1303-1687 bp Feature: domain Description: AraC_binding Location: 1303-1687 bp Feature: domain Description: AraC Location: 1771-2074 bp Feature: domain Description: AraC Location: 1771-2 074 bp Feature: gene Location: 2168-2305 bp Feature: gene Location: 2317-2949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2329-2440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 9-2 440 bp Feature: domain Description: GIIM Note: maturase Location: 2500-2725 bp Feature: domain Description: GIIM Note: maturase Location: 2 500-2 72 5 bp Feature: gene Location: 3040-3795 bp Feature: domain Description: RVT_N Location: 3094-3337 bp Feature: domain Description: RVT_N Location: 3094-3337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3382-3793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3382 -3793 bp Feature: gene Location: 4357-5391 bp Feature: domain Description: COG3547 Location: 4375-5338 bp Feature: domain Description: COG3547 Location: 4375-5338 bp Feature: gene Location: 5772-5972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), COG3547 (Transposase )

Seq: DDQR01000385.1 TPA_asm: Vibrio sp. UBA2437 UBA2437_contig_819, whole genome shotgun sequence (3032 bp)
Overview 1 RT 1: 812-2513 bp Neighborhood of RT #1 [812, 2908] RVT-DGRs Feature: gene Location: 812-1303 bp Feature: gene Location: 1316-1534 bp Feature: gene Location: 1604-2908 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1814-2513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1814-2513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs