myRT

myRT report for GCA_002343915.1_ASM234391v1

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Seq: NETK01000001.1 Nannocystis exedens strain DSM 71 utg0, whole genome shotgun sequence (11270726 bp)
Overview 1 RT 1: 333444-338777 bp 2 RT 2: 895775-904862 bp 3 RT 3: 1504622-1509411 bp 4 RT 4: 1845698-1852725 bp 5 RT 5: 3328130-3334252 bp 6 RT 6: 3658550-3672825 bp 7 RT 7: 6401541-6409691 bp 8 RT 8: 6997874-7002480 bp 9 RT 9: 7163280-7171068 bp 10 RT 10: 9049500-9057495 bp 11 RT 11: 9064978-9071214 bp 12 RT 12: 10141646-10146462 bp 13 RT 13: 10167420-10180216 bp Neighborhood of RT #1 [333444, 339082] TnpB_IS66 LZ_Tnp_IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C cls Neighborhood of RT #2 [895775, 904862] DUF2382 DUF2382 RVT-GII Trypsin RVT-GII VCBS VCBS Neighborhood of RT #3 [1504622, 1509536] zf-IS66 DDE_Tnp_IS66 RVT-GII HTH_21 Tra5 HTH_Tnp_1 Neighborhood of RT #4 [1845698, 1852778] M13 Transposase_mut RVT-GII MbtH GrsT Neighborhood of RT #5 [3328130, 3334252] Peptidase_C25 RVT-GII GIIM Neighborhood of RT #6 [3658550, 3672863] RpoE STKc_PknB_like TPR_12 TPR_12 TPR_12 TPR_12 RVT-Retrons WD40 KOG0318 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #7 [6401541, 6409720] TPR TPR RVT-GII GIIM Glyco_hydro_114 Neighborhood of RT #8 [6997874, 7002509] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #9 [7163280, 7171136] WGR_DNA_ligase SWIM RVT-Retrons NnrU TPR Neighborhood of RT #10 [9049500, 9057860] Esterase RVT-GII RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C STKc_PknB_like TPR_12 TPR_12 TPR_12 TPR_12 Neighborhood of RT #11 [9064978, 9071214] HTH_21 Tra5 HTH_32 HTH_32 RVT-GII LRR_RI LRR_RI Neighborhood of RT #12 [10141646, 10146462] LysR RVT-GII GIIM Neighborhood of RT #13 [10167420, 10180216] Met_dep_hydrolase_A STKc_PknB_like COG3899 BaeS RVT-GII GIIM Beta-lactamase Feature: gene Location: 333444-333818 bp Ori: PCC67247.1 Feature: domain Description: TnpB_IS66 Location: 333465-333750 bp Feature: domain Description: TnpB_IS66 Location: 333465-333750 bp Feature: gene Location: 333815-335014 bp Ori: PCC67248.1 Feature: domain Description: LZ_Tnp_IS66 Location: 333983-334232 bp Feature: domain Description: LZ_Tnp_IS66 Location: 333983-334232 bp Feature: domain Description: DDE_Tnp_IS66 Location: 334475-334907 bp Feature: domain Description: DDE_Tnp_IS66 Location: 334475-334907 bp Feature: gene Location: 334939-336306 bp Ori: PCC67249.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335209-335896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335209-335896 bp Feature: gene Location: 336819-337523 bp Ori: PCC67250.1 Feature: domain Description: DDE_Tnp_IS66 Location: 336897-337296 bp Feature: domain Description: DDE_Tnp_IS66 Location: 336897-337296 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 337314-337422 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 33731 4-337422 bp Feature: gene Location: 337637-339082 bp Ori: PCC67251.1 Gene: ywiE Feature: domain Description: cls Location: 337703-338777 bp Feature: domain Description: cls Location: 337703-338777 bp Feature: gene Location: 895775-897529 bp Ori: PCC67682.1 Feature: domain Description: DUF2382 Location: 895913-896243 bp Feature: domain Description: DUF2382 Location: 89591 3-896243 bp Feature: domain Description: DUF2382 Location: 897056-897386 bp Feature: domain Description: DUF2382 Location: 897056-897386 bp Feature: gene Location: 897651-900974 bp Feature: gene Location: 901238-901411 bp Ori: PCC67684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901241-901394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 241 -901 394 bp Feature: gene Location: 901530-902360 bp Ori: PCC67685.1 Gene: tlp_1 Feature: domain Description: Trypsin Location: 901608-902226 bp Feature: domain Description: Trypsin Location: 901 608-902226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902238-902346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902238-902346 bp Feature: gene Location: 902670-904001 bp Ori: PCC67686.1 Feature: domain Description: VCBS Location: 903576-903762 bp Feature: domain Description: VCBS Location: 903576-903762 bp Feature: domain Description: VCBS Location: 903864-903930 bp Feature: domain Description: VCBS Location: 903864-903930 bp Feature: gene Location: 904011-904862 bp Feature: gene Location: 1504622-1505440 bp Feature: gene Location: 1505469-1506458 bp Ori: PCC68183.1 Feature: domain Description: zf-IS66 Location: 1505724-1505811 bp Feature: domain Description: zf-IS66 Location: 1 505724-1 50581 1 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1505919-1506351 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 50591 9-1 506351 bp Feature: gene Location: 1506383-1507750 bp Ori: PCC68184.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506653-1507340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 506653-1 507340 bp Feature: gene Location: 1508206-1509201 bp Ori: PCC68185.1 Feature: domain Description: HTH_21 Location: 1508395-1508533 bp Feature: domain Description: HTH_21 Location: 1 508395-1 508533 bp Feature: domain Description: Tra5 Location: 1508539-1509073 bp Feature: domain Description: Tra5 Location: 1 508539-1 509073 bp Feature: gene Location: 1509213-1509536 bp Ori: PCC68186.1 Feature: domain Description: HTH_Tnp_1 Location: 1509225-1509411 bp Feature: domain Description: HTH_Tnp_1 Location: 1 509225-1 50941 1 bp Feature: gene Location: 1845698-1847797 bp Ori: PCC68470.1 Gene: pepO_1 Feature: domain Description: M13 Location: 1845893-1847786 bp Feature: domain Description: M1 3 Location: 1 845893-1 847786 bp Feature: gene Location: 1848160-1849110 bp Ori: PCC68471.1 Feature: domain Description: Transposase_mut Location: 1848196-1849033 bp Feature: domain Description: Transposase_mut Location: 1 8481 96-1 849033 bp Feature: gene Location: 1849216-1849752 bp Ori: PCC68472.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849234-1849678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 849234-1 849678 bp Feature: gene Location: 1851692-1851892 bp Ori: PCC68473.1 Feature: domain Description: MbtH Location: 1851707-1851884 bp Feature: domain Description: MbtH Location: 1 851 707-1 851 884 bp Feature: gene Location: 1851996-1852778 bp Ori: PCC68474.1 Gene: lgrE_1 Feature: domain Description: GrsT Location: 1852038-1852725 bp Feature: domain Description: GrsT Location: 1 852038-1 852725 bp Feature: gene Location: 3328130-3328504 bp Feature: gene Location: 3328635-3330371 bp Ori: PCC69622.1 Feature: domain Description: Peptidase_C25 Location: 3328857-3329982 bp Feature: domain Description: Peptidase_C25 Location: 3328857-3329982 bp Feature: gene Location: 3330490-3331662 bp Ori: PCC69623.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3330637-3331264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3330637-3331 264 bp Feature: domain Description: GIIM Note: maturase Location: 3331357-3331561 bp Feature: domain Description: GIIM Note: maturase Location: 3331 357-3331 561 bp Feature: gene Location: 3332484-3333821 bp Feature: gene Location: 3334079-3334252 bp Feature: gene Location: 3658550-3659164 bp Ori: PCC69884.1 Gene: rpoE_8 Feature: domain Description: RpoE Location: 3658565-3659075 bp Feature: domain Description: RpoE Location: 3658565-3659075 bp Feature: gene Location: 3659293-3662550 bp Ori: PCC69885.1 Gene: pknA_2 Feature: domain Description: STKc_PknB_like Location: 3659638-3660472 bp Feature: domain Description: STKc_PknB_like Location: 3659638-3660472 bp Feature: domain Description: TPR_12 Location: 3661288-3661468 bp Feature: domain Description: TPR_1 2 Location: 3661 288-3661 468 bp Feature: domain Description: TPR_12 Location: 3661507-3661684 bp Feature: domain Description: TPR_1 2 Location: 3661 507-3661 684 bp Feature: domain Description: TPR_12 Location: 3661894-3662092 bp Feature: domain Description: TPR_1 2 Location: 3661 894-3662092 bp Feature: domain Description: TPR_12 Location: 3662155-3662350 bp Feature: domain Description: TPR_1 2 Location: 36621 55-3662350 bp Feature: gene Location: 3662962-3664263 bp Ori: PCC69886.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3663427-3664048 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3663427-3664048 bp Feature: gene Location: 3664270-3666177 bp Feature: gene Location: 3666174-3672863 bp Ori: PCC69888.1 Feature: domain Description: WD40 Location: 3666384-3666801 bp Feature: domain Description: WD40 Location: 3666384-3666801 bp Feature: domain Description: KOG0318 Location: 3666855-3667095 bp Feature: domain Description: KOG031 8 Location: 3666855-3667095 bp Feature: domain Description: HEAT_2 Location: 3667158-3667389 bp Feature: domain Description: HEAT_2 Location: 36671 58-3667389 bp Feature: domain Description: HEAT_2 Location: 3667524-3667764 bp Feature: domain Description: HEAT_2 Location: 3667524-3667764 bp Feature: domain Description: HEAT_2 Location: 3668064-3668268 bp Feature: domain Description: HEAT_2 Location: 3668064-3668268 bp Feature: domain Description: HEAT_2 Location: 3668532-3668667 bp Feature: domain Description: HEAT_2 Location: 3668532-3668667 bp Feature: domain Description: HEAT_2 Location: 3668733-3668856 bp Feature: domain Description: HEAT_2 Location: 3668733-3668856 bp Feature: domain Description: HEAT_2 Location: 3669036-3669258 bp Feature: domain Description: HEAT_2 Location: 3669036-3669258 bp Feature: domain Description: HEAT_2 Location: 3669363-3669570 bp Feature: domain Description: HEAT_2 Location: 3669363-3669570 bp Feature: domain Description: HEAT_2 Location: 3670380-3670608 bp Feature: domain Description: HEAT_2 Location: 3670380-3670608 bp Feature: domain Description: HEAT_2 Location: 3671166-3671304 bp Feature: domain Description: HEAT_2 Location: 3671 1 66-3671 304 bp Feature: domain Description: HEAT_2 Location: 3671349-3671511 bp Feature: domain Description: HEAT_2 Location: 3671 349-3671 51 1 bp Feature: domain Description: HEAT_2 Location: 3671568-3671796 bp Feature: domain Description: HEAT_2 Location: 3671 568-3671 796 bp Feature: domain Description: HEAT_2 Location: 3672627-3672825 bp Feature: domain Description: HEAT_2 Location: 3672627-3672825 bp Feature: gene Location: 6401541-6401804 bp Feature: gene Location: 6401811-6404198 bp Ori: PCC72045.1 Feature: domain Description: TPR Location: 6403413-6403608 bp Feature: domain Description: TPR Location: 640341 3-6403608 bp Feature: domain Description: TPR Location: 6403806-6403998 bp Feature: domain Description: TPR Location: 6403806-6403998 bp Feature: gene Location: 6405375-6406790 bp Ori: PCC72046.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6405672-6406305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6405672-6406305 bp Feature: domain Description: GIIM Note: maturase Location: 6406383-6406590 bp Feature: domain Description: GIIM Note: maturase Location: 6406383-6406590 bp Feature: gene Location: 6406800-6408647 bp Feature: gene Location: 6408692-6409720 bp Ori: PCC72048.1 Feature: domain Description: Glyco_hydro_114 Location: 6409037-6409691 bp Feature: domain Description: Glyco_hydro_1 1 4 Location: 6409037-6409691 bp Feature: gene Location: 6997874-6998029 bp Feature: gene Location: 6998481-6999185 bp Ori: PCC72525.1 Feature: domain Description: DDE_Tnp_IS66 Location: 6998559-6998958 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6998559-6998958 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6998976-6999084 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6998976-6999084 bp Feature: gene Location: 6999698-7001065 bp Ori: PCC72526.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6999968-7000655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6999968-7000655 bp Feature: gene Location: 7000990-7001646 bp Ori: PCC72527.1 Feature: domain Description: DDE_Tnp_IS66 Location: 7001107-7001539 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7001 1 07-7001 539 bp Feature: gene Location: 7002168-7002509 bp Ori: PCC72528.1 Feature: domain Description: TnpB_IS66 Location: 7002189-7002480 bp Feature: domain Description: TnpB_IS66 Location: 70021 89-7002480 bp Feature: gene Location: 7163280-7166477 bp Ori: PCC72655.1 Feature: domain Description: WGR_DNA_ligase Location: 7163298-7163520 bp Feature: domain Description: WGR_DNA_ligase Location: 71 63298-71 63520 bp Feature: gene Location: 7166467-7168119 bp Ori: PCC72656.1 Feature: domain Description: SWIM Location: 7167991-7168081 bp Feature: domain Description: SWIM Location: 71 67991 -71 68081 bp Feature: gene Location: 7168481-7170025 bp Ori: PCC72657.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7169030-7169651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 69030-71 69651 bp Feature: gene Location: 7170056-7170766 bp Ori: PCC72658.1 Feature: domain Description: NnrU Location: 7170080-7170749 bp Feature: domain Description: NnrU Location: 71 70080-71 70749 bp Feature: gene Location: 7170777-7171136 bp Ori: PCC72659.1 Feature: domain Description: TPR Location: 7170819-7171068 bp Feature: domain Description: TPR Location: 71 7081 9-71 71 068 bp Feature: gene Location: 9049500-9049967 bp Feature: gene Location: 9050299-9052092 bp Ori: PCC74132.1 Feature: domain Description: Esterase Location: 9051289-9051436 bp Feature: domain Description: Esterase Location: 9051 289-9051 436 bp Feature: gene Location: 9052567-9052971 bp Ori: PCC74133.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9052849-9052969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9052849-9052969 bp Feature: gene Location: 9053029-9053202 bp Ori: PCC74134.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9053035-9053179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9053035-90531 79 bp Feature: gene Location: 9053168-9053926 bp Ori: PCC74135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9053177-9053537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90531 77-9053537 bp Feature: domain Description: GIIM Note: maturase Location: 9053600-9053804 bp Feature: domain Description: GIIM Note: maturase Location: 9053600-9053804 bp Feature: gene Location: 9054046-9054261 bp Ori: PCC74136.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 9054052-9054160 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9054052-90541 60 bp Feature: gene Location: 9054669-9057860 bp Ori: PCC74137.1 Gene: prkC_52 Feature: domain Description: STKc_PknB_like Location: 9054831-9055671 bp Feature: domain Description: STKc_PknB_like Location: 9054831 -9055671 bp Feature: domain Description: TPR_12 Location: 9056583-9056787 bp Feature: domain Description: TPR_1 2 Location: 9056583-9056787 bp Feature: domain Description: TPR_12 Location: 9056853-9057030 bp Feature: domain Description: TPR_1 2 Location: 9056853-9057030 bp Feature: domain Description: TPR_12 Location: 9057060-9057285 bp Feature: domain Description: TPR_1 2 Location: 9057060-9057285 bp Feature: domain Description: TPR_12 Location: 9057318-9057495 bp Feature: domain Description: TPR_1 2 Location: 905731 8-9057495 bp Feature: gene Location: 9064978-9065973 bp Ori: PCC74144.1 Feature: domain Description: HTH_21 Location: 9065167-9065305 bp Feature: domain Description: HTH_21 Location: 90651 67-9065305 bp Feature: domain Description: Tra5 Location: 9065311-9065845 bp Feature: domain Description: Tra5 Location: 906531 1 -9065845 bp Feature: gene Location: 9066130-9066612 bp Ori: PCC74145.1 Feature: domain Description: HTH_32 Location: 9066154-9066235 bp Feature: domain Description: HTH_32 Location: 90661 54-9066235 bp Feature: domain Description: HTH_32 Location: 9066313-9066589 bp Feature: domain Description: HTH_32 Location: 906631 3-9066589 bp Feature: gene Location: 9066720-9067397 bp Ori: PCC74146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9066723-9067005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9066723-9067005 bp Feature: gene Location: 9068666-9070381 bp Ori: PCC74147.1 Gene: inlA_8 Feature: domain Description: LRR_RI Location: 9069179-9069752 bp Feature: domain Description: LRR_RI Location: 90691 79-9069752 bp Feature: domain Description: LRR_RI Location: 9069761-9070214 bp Feature: domain Description: LRR_RI Location: 9069761 -907021 4 bp Feature: gene Location: 9070960-9071214 bp Feature: gene Location: 10141646-10142575 bp Ori: PCC74958.1 Gene: gcvA_2 Feature: domain Description: LysR Location: 10141697-10142558 bp Feature: domain Description: LysR Location: 1 01 41 697-1 01 42558 bp Feature: gene Location: 10142572-10143552 bp Feature: gene Location: 10144255-10145670 bp Ori: PCC74960.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10144552-10145185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 44552-1 01 451 85 bp Feature: domain Description: GIIM Note: maturase Location: 10145263-10145470 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 45263-1 01 45470 bp Feature: gene Location: 10145680-10145937 bp Feature: gene Location: 10146130-10146462 bp Feature: gene Location: 10167420-10168802 bp Ori: PCC74983.1 Gene: hutI_2 Feature: domain Description: Met_dep_hydrolase_A Location: 10167726-10168716 bp Feature: domain Description: Met_dep_hydrolase_A Location: 1 01 67726-1 01 6871 6 bp Feature: gene Location: 10168949-10173997 bp Ori: PCC74984.1 Gene: barA_11 Feature: domain Description: STKc_PknB_like Location: 10168964-10169708 bp Feature: domain Description: STKc_PknB_like Location: 1 01 68964-1 01 69708 bp Feature: domain Description: COG3899 Location: 10169798-10171871 bp Feature: domain Description: COG3899 Location: 1 01 69798-1 01 71 871 bp Feature: domain Description: BaeS Location: 10173011-10173992 bp Feature: domain Description: BaeS Location: 1 01 7301 1 -1 01 73992 bp Feature: gene Location: 10175430-10176602 bp Ori: PCC74985.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10175577-10176204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 75577-1 01 76204 bp Feature: domain Description: GIIM Note: maturase Location: 10176297-10176501 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 76297-1 01 76501 bp Feature: gene Location: 10176721-10178700 bp Ori: PCC74986.1 Gene: ampH_2 Feature: domain Description: Beta-lactamase Location: 10176970-10177999 bp Feature: domain Description: Beta-lactamase Location: 1 01 76970-1 01 77999 bp Feature: gene Location: 10178732-10180216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), RVT-GII, DDE_Tnp_IS66_C (pfam13817), cls, DUF2382 (pfam09557), Trypsin (pfam00089), VCBS (pfam13517), zf-IS66 (pfam13005)
HTH_21 (pfam13276), Tra5 (COG2801), HTH_Tnp_1 (pfam01527), M13 (cd08662), Transposase_mut (pfam00872), MbtH (smart00923), GrsT (COG3208), Peptidase_C25 (pfam01364), GIIM (pfam08388), RpoE (COG3343)
STKc_PknB_like (cd14014), TPR_12 (pfam13424), RVT-Retrons, WD40 (smart00320), KOG0318 (KOG0318, WD40 repeat stress protein/actin interacting protein ), HEAT_2 (pfam13646), TPR (smart00028), Glyco_hydro_114 (pfam03537), WGR_DNA_ligase (cd07998), SWIM (pfam04434)
NnrU (pfam07298), Esterase (pfam00756), HTH_32 (pfam13565), LRR_RI (smart00368), LysR (COG0583), Met_dep_hydrolase_A (cd01299), COG3899 (Predicted ATPase ), BaeS (COG0642), Beta-lactamase (pfam00144)