myRT

myRT report for GCA_002344405.1_ASM234440v1

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Seq: DDTT01000021.1 TPA_asm: Rhodocyclaceae bacterium UBA2357 UBA2357_contig_1488, whole genome shotgun sequence (17640 bp)
Overview 1 RT 1: 7052-14005 bp Neighborhood of RT #1 [7052, 14637] SppA_67K TrmB RVT_N RVT-GII GIIM HNHc PRK09692 Feature: gene Location: 7052-8881 bp Feature: domain Description: SppA_67K Location: 7109-8858 bp Feature: domain Description: SppA_67K Location: 71 09-8858 bp Feature: gene Location: 8883-9671 bp Feature: domain Description: TrmB Location: 8979-9633 bp Feature: domain Description: TrmB Location: 8979-9633 bp Feature: gene Location: 10750-12420 bp Feature: RT Description: RVT_N Location: 10804-11041 bp Feature: RT Description: RVT_N Location: 1 0804-1 1 041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11092-11731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 092-1 1 731 bp Feature: domain Description: GIIM Note: maturase Location: 11782-12016 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 782-1 201 6 bp Feature: domain Description: HNHc Note: nucleases Location: 12223-12373 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2223-1 2373 bp Feature: gene Location: 12505-12699 bp Feature: gene Location: 12787-14637 bp Feature: domain Description: PRK09692 Location: 12796-14005 bp Feature: domain Description: PRK09692 Location: 1 2796-1 4005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09692 (Integrase; provisional), SppA_67K (TIGR00705), TrmB (pfam01978)

Seq: DDTT01000005.1 TPA_asm: Rhodocyclaceae bacterium UBA2357 UBA2357_contig_257, whole genome shotgun sequence (106946 bp)
Overview 1 RT 1: 113-5357 bp Neighborhood of RT #1 [113, 5368] RVT-DGRs YfmG GntR PycA Feature: gene Location: 113-1135 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116-710 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116-710 bp Feature: domain Description: YfmG Location: 947-1064 bp Feature: domain Description: YfmG Location: 947-1064 bp Feature: gene Location: 1265-1867 bp Feature: domain Description: GntR Location: 1277-1643 bp Feature: domain Description: GntR Location: 12 77-1643 bp Feature: gene Location: 1898-5368 bp Feature: domain Description: PycA Location: 1904-5357 bp Feature: domain Description: PycA Location: 1904-5357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, YfmG (COG1262), GntR (pfam00392), PycA (COG1038)

Seq: DDTT01000022.1 TPA_asm: Rhodocyclaceae bacterium UBA2357 UBA2357_contig_3184, whole genome shotgun sequence (3836 bp)
Overview 1 RT 1: 1-1818 bp Neighborhood of RT #1 [1, 2393] RVT-GII PRK09183 COG4584 Feature: gene Location: 1-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 58-697 bp Feature: gene Location: 952-1743 bp Feature: domain Description: PRK09183 Location: 955-1720 bp Feature: domain Description: PRK09183 Location: 955-1720 bp Feature: gene Location: 1740-2393 bp Feature: domain Description: COG4584 Location: 1752-1818 bp Feature: domain Description: COG4584 Location: 1752-1818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional)