myRT

myRT report for GCA_002344525.1_ASM234452v1

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Seq: DDTJ01000104.1 TPA_asm: Akkermansiaceae bacterium UBA2367 UBA2367_contig_487, whole genome shotgun sequence (8428 bp)
Overview 1 RT 1: 36-2393 bp Neighborhood of RT #1 [36, 2393] YrdD RVT-GII GIIM Feature: gene Location: 36-218 bp Feature: domain Description: YrdD Location: 45-207 bp Feature: domain Description: YrdD Location: 45-207 bp Feature: gene Location: 740-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1 01 9 bp Feature: domain Description: GIIM Note: maturase Location: 1067-1280 bp Feature: domain Description: GIIM Note: maturase Location: 1 067-1 280 bp Feature: gene Location: 1388-1744 bp Feature: gene Location: 1800-2393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YrdD (COG0551), RVT-GII, GIIM (pfam08388)

Seq: DDTJ01000023.1 TPA_asm: Akkermansiaceae bacterium UBA2367 UBA2367_contig_8112, whole genome shotgun sequence (17141 bp)
Overview 1 RT 1: 4586-10419 bp Neighborhood of RT #1 [4586, 10433] GapA RVT-Retrons Aes Aes CPA Feature: gene Location: 4586-5584 bp Feature: domain Description: GapA Location: 4601-5573 bp Feature: domain Description: GapA Location: 4601-5573 bp Feature: gene Location: 6073-6780 bp Feature: gene Location: 6860-8167 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7310-7940 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7310-7940 bp Feature: gene Location: 8508-9407 bp Feature: domain Description: Aes Location: 8712-9129 bp Feature: domain Description: Aes Location: 8712 -912 9 bp Feature: domain Description: Aes Location: 9186-9363 bp Feature: domain Description: Aes Location: 9186-9363 bp Feature: gene Location: 9570-10433 bp Feature: domain Description: CPA Location: 9585-10419 bp Feature: domain Description: CPA Location: 9585-10419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GapA (COG0057), RVT-Retrons, Aes (COG0657), CPA (cd07573)

Seq: DDTJ01000041.1 TPA_asm: Akkermansiaceae bacterium UBA2367 UBA2367_contig_8161, whole genome shotgun sequence (57771 bp)
Overview 1 RT 1: 22567-29518 bp Neighborhood of RT #1 [22567, 29541] pbp2_mrdA RVT-DGRs Hrd pfam00656 YfmG Feature: gene Location: 22567-23067 bp Feature: gene Location: 23078-25468 bp Feature: domain Description: pbp2_mrdA Location: 23570-25217 bp Feature: domain Description: pbp2_mrdA Location: 23 570-25217 bp Feature: gene Location: 26113-27099 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26323-26911 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 263 23 -26911 bp Feature: gene Location: 27096-27569 bp Feature: domain Description: Hrd Location: 27345-27540 bp Feature: domain Description: Hrd Location: 273 45-27540 bp Feature: gene Location: 27697-29541 bp Feature: domain Description: pfam00656 Location: 27769-28405 bp Feature: domain Description: pfam00656 Location: 27769-28405 bp Feature: domain Description: YfmG Location: 28780-29518 bp Feature: domain Description: YfmG Location: 28780-29518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pbp2_mrdA (TIGR03423), RVT-DGRs, Hrd (LOAD_Hrd), pfam00656 (Peptidase_C14;Caspase domain), YfmG (COG1262)

Seq: DDTJ01000022.1 TPA_asm: Akkermansiaceae bacterium UBA2367 UBA2367_contig_836, whole genome shotgun sequence (64862 bp)
Overview 1 RT 1: 46021-51062 bp Neighborhood of RT #1 [46021, 51085] RVT-DGRs Avd_like Peptidase_C14 Peptidase_C14 pfam03781 Feature: gene Location: 46021-46905 bp Feature: gene Location: 47261-47476 bp Feature: gene Location: 47523-48629 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47742-48390 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 774 2-4 8390 bp Feature: gene Location: 48747-49106 bp Feature: domain Description: Avd_like Location: 48783-49092 bp Feature: domain Description: Avd_like Location: 4 8783-4 9092 bp Feature: gene Location: 49649-51085 bp Feature: domain Description: Peptidase_C14 Location: 49715-49829 bp Feature: domain Description: Peptidase_C14 Location: 4 9715-4 9829 bp Feature: domain Description: Peptidase_C14 Location: 49832-50132 bp Feature: domain Description: Peptidase_C14 Location: 4 9832-50132 bp Feature: domain Description: pfam03781 Location: 50339-51062 bp Feature: domain Description: pfam03781 Location: 50339-51062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), Peptidase_C14 (pfam00656), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)