myRT

myRT report for GCA_002345025.1_ASM234502v1

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Seq: DDUX01000037.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2327 UBA2327_contig_101, whole genome shotgun sequence (12062 bp)
Overview 1 RT 1: 1360-6961 bp Neighborhood of RT #1 [1360, 7128] YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 1360-2307 bp Feature: domain Description: YfmG Location: 1498-2164 bp Feature: domain Description: YfmG Location: 1 498-21 64 bp Feature: gene Location: 2471-2632 bp Feature: gene Location: 2637-3650 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2844-3435 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2844-3435 bp Feature: gene Location: 3692-4198 bp Feature: domain Description: Hrd Location: 3932-4142 bp Feature: domain Description: Hrd Location: 3932-41 42 bp Feature: gene Location: 4207-7128 bp Feature: domain Description: YfmG Location: 6295-6961 bp Feature: domain Description: YfmG Location: 6295-6961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: DDUX01000157.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2327 UBA2327_contig_2217, whole genome shotgun sequence (4079 bp)
Overview 1 RT 1: 1-3980 bp Neighborhood of RT #1 [1, 4006] FGE-sulfatase RVT-DGRs Avd_like YfmG Feature: gene Location: 1-927 bp Feature: domain Description: FGE-sulfatase Location: 229-898 bp Feature: domain Description: FGE-sulfatase Location: 2 2 9-898 bp Feature: gene Location: 1017-2078 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1215-1863 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 15-1863 bp Feature: gene Location: 2182-2583 bp Feature: domain Description: Avd_like Location: 2209-2521 bp Feature: domain Description: Avd_like Location: 2 2 09-2 52 1 bp Feature: gene Location: 3188-4006 bp Feature: domain Description: YfmG Location: 3194-3980 bp Feature: domain Description: YfmG Location: 3194-3980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, FGE-sulfatase (pfam03781), Avd_like (cd16376), YfmG (COG1262)

Seq: DDUX01000140.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2327 UBA2327_contig_253, whole genome shotgun sequence (103738 bp)
Overview 1 RT 1: 101674-103579 bp Neighborhood of RT #1 [101674, 103737] Xcc1710_like CE4_ArnD RVT-GII GIIM Feature: gene Location: 101674-102045 bp Feature: domain Description: Xcc1710_like Location: 101713-102037 bp Feature: domain Description: Xcc1710_like Location: 101713 -10203 7 bp Feature: gene Location: 102064-103002 bp Feature: domain Description: CE4_ArnD Location: 102109-102940 bp Feature: domain Description: CE4_ArnD Location: 102109-102940 bp Feature: gene Location: 103063-103737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103081-103318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 081-103 3 18 bp Feature: domain Description: GIIM Note: maturase Location: 103381-103579 bp Feature: domain Description: GIIM Note: maturase Location: 103 3 81-103 579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Xcc1710_like (cd05560), CE4_ArnD (cd10939), RVT-GII, GIIM (pfam08388)

Seq: DDUX01000009.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2327 UBA2327_contig_277, whole genome shotgun sequence (36521 bp)
Overview 1 RT 1: 27928-34204 bp Neighborhood of RT #1 [27928, 34401] PRK09601 SGNH_hydrolase RVT-GII HEPN_AbiU2 Feature: gene Location: 27928-29019 bp Feature: domain Description: PRK09601 Location: 27931-29017 bp Feature: domain Description: PRK09601 Location: 27931-29017 bp Feature: gene Location: 29427-30227 bp Feature: domain Description: SGNH_hydrolase Location: 29493-30183 bp Feature: domain Description: SGNH_hydrolase Location: 294 93-30183 bp Feature: gene Location: 30224-31084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30536-30761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30536-30761 bp Feature: gene Location: 31761-32879 bp Feature: gene Location: 33583-34401 bp Feature: domain Description: HEPN_AbiU2 Location: 33622-34204 bp Feature: domain Description: HEPN_AbiU2 Location: 33622-34 204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09601 (redox-regulated ATPase YchF), SGNH_hydrolase (cl01053), RVT-GII, HEPN_AbiU2 (pfam18734)

Seq: DDUX01000165.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2327 UBA2327_contig_610, whole genome shotgun sequence (20598 bp)
Overview 1 RT 1: 13247-18476 bp Neighborhood of RT #1 [13247, 18502] AAA_16 pfam03781 RVT-DGRs Avd_like YfmG Feature: gene Location: 13247-16705 bp Feature: domain Description: AAA_16 Location: 14588-15068 bp Feature: domain Description: AAA_16 Location: 145 88-15 068 bp Feature: domain Description: pfam03781 Location: 16061-16676 bp Feature: domain Description: pfam03781 Location: 16061-16676 bp Feature: gene Location: 16810-16953 bp Feature: gene Location: 17075-18049 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17153-17735 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1715 3-17735 bp Feature: gene Location: 17810-18178 bp Feature: domain Description: Avd_like Location: 17966-18167 bp Feature: domain Description: Avd_like Location: 17966-18167 bp Feature: gene Location: 18365-18502 bp Feature: domain Description: YfmG Location: 18371-18476 bp Feature: domain Description: YfmG Location: 18371-18476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_16 (pfam13191), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: DDUX01000043.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2327 UBA2327_contig_822, whole genome shotgun sequence (9946 bp)
Overview 1 RT 1: 7488-9934 bp Neighborhood of RT #1 [7488, 9945] Resolvase Recombinase Zn_ribbon_recom ANTAR ANTAR RVT-CRISPR-like Feature: gene Location: 7488-9272 bp Feature: domain Description: Resolvase Location: 7500-7941 bp Feature: domain Description: Resolvase Location: 7500-7941 bp Feature: domain Description: Recombinase Location: 8028-8379 bp Feature: domain Description: Recombinase Location: 8028-8379 bp Feature: domain Description: Zn_ribbon_recom Location: 8427-8616 bp Feature: domain Description: Zn_ribbon_recom Location: 8427-86 16 bp Feature: gene Location: 9416-9745 bp Feature: domain Description: ANTAR Location: 9497-9566 bp Feature: domain Description: ANTAR Location: 9497-956 6 bp Feature: domain Description: ANTAR Location: 9650-9695 bp Feature: domain Description: ANTAR Location: 96 50-96 95 bp Feature: gene Location: 9799-9945 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9853-9934 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9853-9934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), ANTAR (smart01012), RVT-CRISPR