myRT

myRT report for GCA_002347745.1_ASM234774v1

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Seq: DDXC01000012.1 TPA_asm: Desulfobulbaceae bacterium UBA2270 UBA2270_contig_3753, whole genome shotgun sequence (35834 bp)
Overview 1 RT 1: 209-3695 bp Neighborhood of RT #1 [209, 3742] RVT-GII COG4447 Rax2 COG4447 COG4447 COG4447 COG4447 Feature: gene Location: 209-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 5-1 022 bp Feature: gene Location: 1234-1668 bp Feature: gene Location: 1934-3742 bp Feature: domain Description: COG4447 Location: 2021-2162 bp Feature: domain Description: COG4447 Location: 2021 -21 62 bp Feature: domain Description: Rax2 Location: 2225-2288 bp Feature: domain Description: Rax2 Location: 2225-2288 bp Feature: domain Description: COG4447 Location: 2303-2495 bp Feature: domain Description: COG4447 Location: 2303-2495 bp Feature: domain Description: COG4447 Location: 2741-3005 bp Feature: domain Description: COG4447 Location: 2741 -3005 bp Feature: domain Description: COG4447 Location: 3047-3230 bp Feature: domain Description: COG4447 Location: 3047-3230 bp Feature: domain Description: COG4447 Location: 3272-3695 bp Feature: domain Description: COG4447 Location: 3272-3695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), Rax2 (pfam12768)

Seq: DDXC01000134.1 TPA_asm: Desulfobulbaceae bacterium UBA2270 UBA2270_contig_3773, whole genome shotgun sequence (6484 bp)
Overview 1 RT 1: 2520-6456 bp Neighborhood of RT #1 [2520, 6456] Peptidase_C14 RVT-GII GIIM Feature: gene Location: 2520-2846 bp Feature: gene Location: 2849-4180 bp Feature: domain Description: Peptidase_C14 Location: 2927-3518 bp Feature: domain Description: Peptidase_C14 Location: 2 92 7-3518 bp Feature: gene Location: 4369-4887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4375-4507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4375-4507 bp Feature: domain Description: GIIM Note: maturase Location: 4588-4810 bp Feature: domain Description: GIIM Note: maturase Location: 4588-4810 bp Feature: gene Location: 4932-5099 bp Feature: gene Location: 5143-6456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), RVT-GII, GIIM (pfam08388)

Seq: DDXC01000006.1 TPA_asm: Desulfobulbaceae bacterium UBA2270 UBA2270_contig_4579, whole genome shotgun sequence (15895 bp)
Overview 1 RT 1: 11325-15804 bp Neighborhood of RT #1 [11325, 15893] KdtA ComEC_Rec2 RVT-GII GIIM Feature: gene Location: 11325-12668 bp Feature: domain Description: KdtA Location: 11397-12660 bp Feature: domain Description: KdtA Location: 113 97-12660 bp Feature: gene Location: 12665-15142 bp Feature: domain Description: ComEC_Rec2 Location: 13058-15086 bp Feature: domain Description: ComEC_Rec2 Location: 13 058-15086 bp Feature: gene Location: 15312-15893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15333-15516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 3 3 -15516 bp Feature: domain Description: GIIM Note: maturase Location: 15612-15804 bp Feature: domain Description: GIIM Note: maturase Location: 15612-15804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdtA (COG1519), ComEC_Rec2 (TIGR00361), RVT-GII, GIIM (pfam08388)

Seq: DDXC01000124.1 TPA_asm: Desulfobulbaceae bacterium UBA2270 UBA2270_contig_6543, whole genome shotgun sequence (13675 bp)
Overview 1 RT 1: 2-2366 bp Neighborhood of RT #1 [2, 2491] RVT-GII DDE_Tnp_1_2 Feature: gene Location: 2-715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-704 bp Feature: gene Location: 639-1259 bp Feature: gene Location: 1445-2491 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2108-2366 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2108-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1_2 (pfam13586)

Seq: DDXC01000008.1 TPA_asm: Desulfobulbaceae bacterium UBA2270 UBA2270_contig_682, whole genome shotgun sequence (64235 bp)
Overview 1 RT 1: 24592-28962 bp Neighborhood of RT #1 [24592, 28979] UbiE RVT-UG7 PRK10590 Feature: gene Location: 24592-24813 bp Feature: gene Location: 25063-25704 bp Feature: domain Description: UbiE Location: 25075-25570 bp Feature: domain Description: UbiE Location: 25 075 -25 5 70 bp Feature: gene Location: 25895-27475 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26315-26708 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26315 -26708 bp Feature: gene Location: 27521-27703 bp Feature: gene Location: 27702-28979 bp Feature: domain Description: PRK10590 Location: 27705-28962 bp Feature: domain Description: PRK105 90 Location: 27705 -28962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-UG7, PRK10590 (ATP-dependent RNA helicase RhlE; Provisional)

Seq: DDXC01000046.1 TPA_asm: Desulfobulbaceae bacterium UBA2270 UBA2270_contig_780, whole genome shotgun sequence (74668 bp)
Overview 1 RT 1: 73047-74185 bp Neighborhood of RT #1 [73047, 74271] toxin_Txe_YoeB PhdYeFM_antitox RVT-GII GIIM Feature: gene Location: 73047-73310 bp Feature: domain Description: toxin_Txe_YoeB Location: 73068-73305 bp Feature: domain Description: toxin_Txe_YoeB Location: 7306 8-73305 bp Feature: gene Location: 73307-73549 bp Feature: domain Description: PhdYeFM_antitox Location: 73310-73511 bp Feature: domain Description: PhdYeFM_antitox Location: 73310-73511 bp Feature: gene Location: 73786-74271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73792-73894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73792-73894 bp Feature: domain Description: GIIM Note: maturase Location: 73963-74185 bp Feature: domain Description: GIIM Note: maturase Location: 7396 3-74185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT toxin_Txe_YoeB (TIGR02116), PhdYeFM_antitox (pfam02604), RVT-GII, GIIM (pfam08388)