myRT

myRT report for GCA_002351425.1_ASM235142v1

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Seq: NWBW01000017.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_17, whole genome shotgun sequence (376140 bp)
Overview 1 RT 1: 62344-70534 bp 2 RT 2: 86799-97096 bp Neighborhood of RT #1 [62344, 70542] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86799, 97107] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 62344-63360 bp Feature: domain Description: COG3178 Location: 62347-63346 bp Feature: domain Description: COG31 78 Location: 62347-63346 bp Feature: gene Location: 64233-64445 bp Feature: gene Location: 64632-66344 bp Feature: RT Description: RVT_N Location: 64689-64932 bp Feature: RT Description: RVT_N Location: 64689-64932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64977-65610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64977-6561 0 bp Feature: domain Description: YkfC Location: 65823-65973 bp Feature: domain Description: YkfC Location: 65823-65973 bp Feature: domain Description: HNH Note: nucleases Location: 66150-66288 bp Feature: domain Description: HNH Note: nucleases Location: 661 50-66288 bp Feature: gene Location: 66477-69269 bp Feature: domain Description: LptD Location: 66672-69255 bp Feature: domain Description: LptD Location: 66672-69255 bp Feature: gene Location: 69250-70542 bp Feature: domain Description: PRK10770 Location: 69340-70534 bp Feature: domain Description: PRK1 0770 Location: 69340-70534 bp Feature: gene Location: 86799-88652 bp Feature: domain Description: PRK05658 Location: 86811-88650 bp Feature: domain Description: PRK05658 Location: 8681 1 -88650 bp Feature: gene Location: 88759-92496 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88867-89524 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88867-89524 bp Feature: domain Description: PRK09776 Location: 89737-90208 bp Feature: domain Description: PRK09776 Location: 89737-90208 bp Feature: domain Description: PAS Location: 90280-90790 bp Feature: domain Description: PAS Location: 90280-90790 bp Feature: domain Description: PRK10060 Location: 90799-92446 bp Feature: domain Description: PRK1 0060 Location: 90799-92446 bp Feature: gene Location: 93577-95262 bp Feature: RT Description: RVT_N Location: 93634-93874 bp Feature: RT Description: RVT_N Location: 93634-93874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93922-94558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93922-94558 bp Feature: domain Description: GIIM Note: maturase Location: 94612-94843 bp Feature: domain Description: GIIM Note: maturase Location: 9461 2-94843 bp Feature: domain Description: HNH Note: nucleases Location: 95095-95233 bp Feature: domain Description: HNH Note: nucleases Location: 95095-95233 bp Feature: gene Location: 95590-95727 bp Feature: gene Location: 95986-97107 bp Feature: domain Description: COG3177 Location: 96004-97096 bp Feature: domain Description: COG31 77 Location: 96004-97096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )