myRT

myRT report for GCA_002351435.1_ASM235143v1

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Seq: NWBV01000044.1 Pseudomonas aeruginosa strain ICBBVIM-2 NL27_S27_L001_R1_001__paired__contig_44, whole genome shotgun sequence (95320 bp)
Overview 1 RT 1: 62343-70533 bp 2 RT 2: 86798-95232 bp Neighborhood of RT #1 [62343, 70541] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86798, 95261] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH Feature: gene Location: 62343-63359 bp Feature: domain Description: COG3178 Location: 62346-63345 bp Feature: domain Description: COG31 78 Location: 62346-63345 bp Feature: gene Location: 64232-64444 bp Feature: gene Location: 64631-66343 bp Feature: RT Description: RVT_N Location: 64688-64931 bp Feature: RT Description: RVT_N Location: 64688-64931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64976-65609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64976-65609 bp Feature: domain Description: YkfC Location: 65822-65972 bp Feature: domain Description: YkfC Location: 65822-65972 bp Feature: domain Description: HNH Note: nucleases Location: 66149-66287 bp Feature: domain Description: HNH Note: nucleases Location: 661 49-66287 bp Feature: gene Location: 66476-69268 bp Feature: domain Description: LptD Location: 66671-69254 bp Feature: domain Description: LptD Location: 66671 -69254 bp Feature: gene Location: 69249-70541 bp Feature: domain Description: PRK10770 Location: 69339-70533 bp Feature: domain Description: PRK1 0770 Location: 69339-70533 bp Feature: gene Location: 86798-88651 bp Feature: domain Description: PRK05658 Location: 86810-88649 bp Feature: domain Description: PRK05658 Location: 8681 0-88649 bp Feature: gene Location: 88758-92495 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88866-89523 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88866-89523 bp Feature: domain Description: PRK09776 Location: 89736-90207 bp Feature: domain Description: PRK09776 Location: 89736-90207 bp Feature: domain Description: PAS Location: 90279-90789 bp Feature: domain Description: PAS Location: 90279-90789 bp Feature: domain Description: PRK10060 Location: 90798-92445 bp Feature: domain Description: PRK1 0060 Location: 90798-92445 bp Feature: gene Location: 93576-95261 bp Feature: RT Description: RVT_N Location: 93633-93873 bp Feature: RT Description: RVT_N Location: 93633-93873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93921-94557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93921 -94557 bp Feature: domain Description: GIIM Note: maturase Location: 94611-94842 bp Feature: domain Description: GIIM Note: maturase Location: 9461 1 -94842 bp Feature: domain Description: HNH Note: nucleases Location: 95094-95232 bp Feature: domain Description: HNH Note: nucleases Location: 95094-95232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388)