myRT

myRT report for GCA_002352265.1_ASM235226v1

Download annotations/find similar RTs

Seq: DEID01000170.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2783 UBA2783_contig_1278, whole genome shotgun sequence (22309 bp)
Overview 1 RT 1: 1368-6172 bp Neighborhood of RT #1 [1368, 6186] PRK02126 RVT-GII dCache_1 GAF CHD Feature: gene Location: 1368-1532 bp Feature: gene Location: 1545-1721 bp Feature: domain Description: PRK02126 Location: 1566-1668 bp Feature: domain Description: PRK021 26 Location: 1 566-1 668 bp Feature: gene Location: 2065-2529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2134-2293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 34-2293 bp Feature: gene Location: 3112-3321 bp Feature: gene Location: 3748-6186 bp Feature: domain Description: dCache_1 Location: 4051-4786 bp Feature: domain Description: dCache_1 Location: 4051 -4786 bp Feature: domain Description: GAF Location: 5044-5437 bp Feature: domain Description: GAF Location: 5044-5437 bp Feature: domain Description: CHD Location: 5713-6172 bp Feature: domain Description: CHD Location: 571 3-61 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02126 (ribonuclease Z; Provisional), RVT-GII, dCache_1 (pfam02743), GAF (smart00065), CHD (cd07302)

Seq: DEID01000074.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA2783 UBA2783_contig_1296, whole genome shotgun sequence (77340 bp)
Overview 1 RT 1: 13301-18840 bp Neighborhood of RT #1 [13301, 18917] YfmG Hrd RVT-DGRs YfmG Feature: gene Location: 13301-16132 bp Feature: domain Description: YfmG Location: 15251-15917 bp Feature: domain Description: YfmG Location: 152 51-15917 bp Feature: gene Location: 16169-16639 bp Feature: domain Description: Hrd Location: 16424-16628 bp Feature: domain Description: Hrd Location: 1642 4-1662 8 bp Feature: gene Location: 16650-17678 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16860-17451 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16860-17451 bp Feature: gene Location: 17837-18040 bp Feature: gene Location: 18015-18917 bp Feature: domain Description: YfmG Location: 18174-18840 bp Feature: domain Description: YfmG Location: 18174-18840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs