myRT

myRT report for GCA_002352385.1_ASM235238v1

Download annotations/find similar RTs

Seq: DEII01000251.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_13082, whole genome shotgun sequence (2989 bp)
Overview 1 RT 1: 3-2246 bp Neighborhood of RT #1 [3, 2246] RVT-GII GIIM Feature: gene Location: 3-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-945 bp Feature: domain Description: GIIM Note: maturase Location: 987-1191 bp Feature: domain Description: GIIM Note: maturase Location: 987-1 1 91 bp Feature: gene Location: 1500-1628 bp Feature: gene Location: 1677-2246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DEII01000084.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_19032, whole genome shotgun sequence (11020 bp)
Overview 1 RT 1: 3-2697 bp Neighborhood of RT #1 [3, 2697] DUF4338 RVT-GII Feature: gene Location: 3-260 bp Feature: domain Description: DUF4338 Location: 93-252 bp Feature: domain Description: DUF4338 Location: 93-2 52 bp Feature: gene Location: 355-1242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613-12 2 2 bp Feature: gene Location: 1375-1782 bp Feature: gene Location: 2026-2697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4338 (pfam14236), RVT-GII

Seq: DEII01000147.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_21612, whole genome shotgun sequence (6903 bp)
Overview 1 RT 1: 267-2450 bp Neighborhood of RT #1 [267, 2461] RVT-GII GIIM COG5421 YfdV Feature: gene Location: 267-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 -3 75 bp Feature: domain Description: GIIM Note: maturase Location: 444-669 bp Feature: domain Description: GIIM Note: maturase Location: 444-669 bp Feature: gene Location: 865-1470 bp Feature: domain Description: COG5421 Location: 1081-1333 bp Feature: domain Description: COG5421 Location: 1081-13 3 3 bp Feature: gene Location: 1580-2461 bp Feature: domain Description: YfdV Location: 1583-2450 bp Feature: domain Description: YfdV Location: 1583 -2450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5421 (Transposase ), YfdV (COG0679)

Seq: DEII01000148.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_21614, whole genome shotgun sequence (3643 bp)
Overview 1 RT 1: 3-3455 bp Neighborhood of RT #1 [3, 3455] RVT-GII GIIM RVT-GII Feature: gene Location: 3-512 bp Feature: gene Location: 509-1033 bp Feature: gene Location: 949-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-1168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-1168 bp Feature: domain Description: GIIM Note: maturase Location: 1249-1468 bp Feature: domain Description: GIIM Note: maturase Location: 124 9-14 68 bp Feature: gene Location: 1490-2074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-1796 bp Feature: gene Location: 2399-2578 bp Feature: gene Location: 2922-3455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DEII01000052.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_2366, whole genome shotgun sequence (71360 bp)
Overview 1 RT 1: 63782-71058 bp Neighborhood of RT #1 [63782, 71058] YeeA HemK YeeA RVT-UG25 Feature: gene Location: 63782-67663 bp Feature: domain Description: YeeA Location: 65219-65546 bp Feature: domain Description: YeeA Location: 65 219-65 5 46 bp Feature: domain Description: HemK Location: 65945-66071 bp Feature: domain Description: HemK Location: 65 945 -66071 bp Feature: domain Description: YeeA Location: 66833-67106 bp Feature: domain Description: YeeA Location: 66833-67106 bp Feature: gene Location: 67989-68954 bp Feature: gene Location: 68951-70693 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 69365-69767 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 69365 -69767 bp Feature: gene Location: 70760-70897 bp Feature: gene Location: 70825-71058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeA (COG1002), HemK (COG2890), RVT-UG25

Seq: DEII01000017.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_27104, whole genome shotgun sequence (6339 bp)
Overview 1 RT 1: 2612-6337 bp Neighborhood of RT #1 [2612, 6337] DDE_Tnp_1 RVT-GII RVT-GII GIIM Feature: gene Location: 2612-3814 bp Feature: domain Description: DDE_Tnp_1 Location: 2945-3536 bp Feature: domain Description: DDE_Tnp_1 Location: 2945-3536 bp Feature: gene Location: 3693-4169 bp Feature: gene Location: 4730-5269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4985-5267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4985-526 7 bp Feature: gene Location: 5262-5996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5268-5649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526 8-56 49 bp Feature: domain Description: GIIM Note: maturase Location: 5727-5937 bp Feature: domain Description: GIIM Note: maturase Location: 5727-5937 bp Feature: gene Location: 6122-6337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: DEII01000156.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_2740, whole genome shotgun sequence (5983 bp)
Overview 1 RT 1: 2-2190 bp Neighborhood of RT #1 [2, 2190] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 2-241 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 47-239 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 47 -239 bp Feature: gene Location: 279-1259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-882 bp Feature: domain Description: GIIM Note: maturase Location: 954-1164 bp Feature: domain Description: GIIM Note: maturase Location: 954-1164 bp Feature: gene Location: 1707-1871 bp Feature: gene Location: 1972-2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: DEII01000075.1 TPA_asm: Methylococcaceae bacterium UBA2778 UBA2778_contig_88723, whole genome shotgun sequence (3953 bp)
Overview 1 RT 1: 2-3349 bp Neighborhood of RT #1 [2, 3537] RVT-GII RVT-GII GIIM ARS_like Feature: gene Location: 2-205 bp Feature: gene Location: 566-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1061 bp Feature: gene Location: 1051-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1348 bp Feature: domain Description: GIIM Note: maturase Location: 1432-1528 bp Feature: domain Description: GIIM Note: maturase Location: 1432-1528 bp Feature: gene Location: 1564-1725 bp Feature: gene Location: 1930-3537 bp Feature: domain Description: ARS_like Location: 2032-3349 bp Feature: domain Description: ARS_like Location: 2032-3349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ARS_like (cd16146)