myRT

myRT report for GCA_002354345.1_ASM235434v1

Download annotations/find similar RTs

Seq: DELJ01000022.1 TPA_asm: Pseudomonas stutzeri isolate UBA2699 UBA2699_contig_113, whole genome shotgun sequence (18192 bp)
Overview 1 RT 1: 13527-17914 bp Neighborhood of RT #1 [13527, 18117] PAS_3 GAF PRK10060 RVT-GII GIIM Feature: gene Location: 13527-16199 bp Feature: domain Description: PAS_3 Location: 13650-13842 bp Feature: domain Description: PAS_3 Location: 1 3650-1 3842 bp Feature: domain Description: GAF Location: 14094-14502 bp Feature: domain Description: GAF Location: 1 4094-1 4502 bp Feature: domain Description: PRK10060 Location: 14526-16185 bp Feature: domain Description: PRK1 0060 Location: 1 4526-1 61 85 bp Feature: gene Location: 15927-16838 bp Feature: gene Location: 17269-18117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17272-17632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7272-1 7632 bp Feature: domain Description: GIIM Note: maturase Location: 17683-17914 bp Feature: domain Description: GIIM Note: maturase Location: 1 7683-1 791 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_3 (pfam08447), GAF (smart00065), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-GII, GIIM (pfam08388)

Seq: DELJ01000095.1 TPA_asm: Pseudomonas stutzeri isolate UBA2699 UBA2699_contig_141, whole genome shotgun sequence (55198 bp)
Overview 1 RT 1: 378-7971 bp 2 RT 2: 27796-32920 bp Neighborhood of RT #1 [378, 7979] lipid_A_lpxH PRK10791 RVT_N RVT-GII YkfC HNHc PRK05347 cysS Neighborhood of RT #2 [27796, 33369] FII FI RVT-DGRs Avd_like COG5301 pfam03781 Feature: gene Location: 378-1100 bp Feature: domain Description: lipid_A_lpxH Location: 387-1071 bp Feature: domain Description: lipid_A_lpxH Location: 387-1071 bp Feature: gene Location: 1108-1602 bp Feature: domain Description: PRK10791 Location: 1111-1597 bp Feature: domain Description: PRK10791 Location: 1111-1597 bp Feature: gene Location: 2813-4552 bp Feature: RT Description: RVT_N Location: 2873-3116 bp Feature: RT Description: RVT_N Location: 2 873-3116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3164-3815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3164-3815 bp Feature: domain Description: YkfC Location: 4037-4169 bp Feature: domain Description: YkfC Location: 4037-4169 bp Feature: domain Description: HNHc Note: nucleases Location: 4349-4505 bp Feature: domain Description: HNHc Note: nucleases Location: 4349-4505 bp Feature: gene Location: 4927-6594 bp Feature: domain Description: PRK05347 Location: 4942-6589 bp Feature: domain Description: PRK05347 Location: 4942 -6589 bp Feature: gene Location: 6594-7979 bp Feature: domain Description: cysS Location: 6597-7971 bp Feature: domain Description: cysS Location: 6597-7971 bp Feature: gene Location: 27796-28311 bp Feature: domain Description: FII Location: 27799-28309 bp Feature: domain Description: FII Location: 2 7799-2 8309 bp Feature: gene Location: 28390-29580 bp Feature: domain Description: FI Location: 28393-29569 bp Feature: domain Description: FI Location: 2 8393-2 9569 bp Feature: gene Location: 30020-31075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30233-30860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 302 33-30860 bp Feature: gene Location: 31386-31730 bp Feature: domain Description: Avd_like Location: 31416-31716 bp Feature: domain Description: Avd_like Location: 31416-31716 bp Feature: gene Location: 31789-33369 bp Feature: domain Description: COG5301 Location: 31792-32281 bp Feature: domain Description: COG5301 Location: 31792 -32 2 81 bp Feature: domain Description: pfam03781 Location: 32590-32920 bp Feature: domain Description: pfam03781 Location: 32 590-32 92 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10791 (peptidylprolyl isomerase B), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), lipid_A_lpxH (TIGR01854), cysS (TIGR00435), FII (PHA02600), FI (PHA02560), RVT-DGRs
Avd_like (cd16376), COG5301 (Phage-related tail fibre protein ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: DELJ01000044.1 TPA_asm: Pseudomonas stutzeri isolate UBA2699 UBA2699_contig_296, whole genome shotgun sequence (87194 bp)
Overview 1 RT 1: 1-5771 bp Neighborhood of RT #1 [1, 5779] RVT-GII PDHac_trf_long AceF aceE Feature: gene Location: 1-597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 58-598 bp Feature: gene Location: 1085-3094 bp Feature: domain Description: PDHac_trf_long Location: 1097-1790 bp Feature: domain Description: PDHac_trf_long Location: 1097-1790 bp Feature: domain Description: AceF Location: 1805-3092 bp Feature: domain Description: AceF Location: 1805-3 092 bp Feature: gene Location: 3122-5779 bp Feature: domain Description: aceE Location: 3128-5771 bp Feature: domain Description: aceE Location: 3 128-5771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDHac_trf_long (TIGR01348), AceF (COG0508), RVT-GII

Seq: DELJ01000103.1 TPA_asm: Pseudomonas stutzeri isolate UBA2699 UBA2699_contig_497, whole genome shotgun sequence (2877 bp)
Overview 1 RT 1: 127-2875 bp Neighborhood of RT #1 [127, 2874] MFS_ShiA_like RVT-GII Feature: gene Location: 127-1806 bp Feature: domain Description: MFS_ShiA_like Location: 193-1759 bp Feature: domain Description: MFS_ShiA_like Location: 193-1759 bp Feature: gene Location: 2170-2874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2638-2875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2638-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ShiA_like (cd17369), RVT-GII