myRT

myRT report for GCA_002358485.1_ASM235848v1

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Seq: DEOY01000205.1 TPA_asm: Bacteroides sp. UBA3406 UBA3406_contig_1490, whole genome shotgun sequence (19407 bp)
Overview 1 RT 1: 4671-12880 bp Neighborhood of RT #1 [4671, 12880] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 4671-10079 bp Feature: domain Description: DUF1566 Location: 9807-10068 bp Feature: domain Description: DUF1 566 Location: 9807-1 0068 bp Feature: gene Location: 10121-10477 bp Feature: domain Description: Avd_like Location: 10148-10457 bp Feature: domain Description: Avd_like Location: 1 01 48-1 0457 bp Feature: gene Location: 10485-11897 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10875-11577 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0875-1 1 577 bp Feature: gene Location: 12116-12487 bp Feature: gene Location: 12533-12880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF1566 (pfam07603)

Seq: DEOY01000164.1 TPA_asm: Bacteroides sp. UBA3406 UBA3406_contig_1570, whole genome shotgun sequence (28157 bp)
Overview 1 RT 1: 4281-9700 bp Neighborhood of RT #1 [4281, 9700] RVT-DGRs Feature: gene Location: 4281-6980 bp Feature: gene Location: 7190-7414 bp Feature: gene Location: 7497-8795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7710-8301 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7710-8301 bp Feature: gene Location: 8795-9274 bp Feature: gene Location: 9452-9700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: DEOY01000224.1 TPA_asm: Bacteroides sp. UBA3406 UBA3406_contig_2674, whole genome shotgun sequence (8135 bp)
Overview 1 RT 1: 4346-8053 bp Neighborhood of RT #1 [4346, 8053] INT_C_like_2 RVT_N RVT-GII GIIM Feature: gene Location: 4346-4924 bp Feature: gene Location: 4965-5882 bp Feature: domain Description: INT_C_like_2 Location: 5355-5880 bp Feature: domain Description: INT_C_like_2 Location: 53 55-5880 bp Feature: gene Location: 5915-7420 bp Feature: RT Description: RVT_N Location: 5975-6218 bp Feature: RT Description: RVT_N Location: 5975-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6263-6911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6263 -6911 bp Feature: domain Description: GIIM Note: maturase Location: 6962-7196 bp Feature: domain Description: GIIM Note: maturase Location: 6962-7196 bp Feature: gene Location: 7880-8053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_2 (cd01191), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DEOY01000172.1 TPA_asm: Bacteroides sp. UBA3406 UBA3406_contig_2954, whole genome shotgun sequence (2686 bp)
Overview 1 RT 1: 2-2385 bp Neighborhood of RT #1 [2, 2684] PRK13531 PRK11071 RVT-Retrons Feature: gene Location: 2-1027 bp Feature: domain Description: PRK13531 Location: 20-953 bp Feature: domain Description: PRK13531 Location: 20-953 bp Feature: gene Location: 1027-1959 bp Feature: domain Description: PRK11071 Location: 1036-1408 bp Feature: domain Description: PRK11071 Location: 1036-14 08 bp Feature: gene Location: 1956-2684 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1995-2385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1995-2385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11071 (esterase YqiA; Provisional), RVT-Retrons, PRK13531 (regulatory ATPase RavA; Provisional)

Seq: DEOY01000313.1 TPA_asm: Bacteroides sp. UBA3406 UBA3406_contig_7784, whole genome shotgun sequence (5748 bp)
Overview 1 RT 1: 2953-5464 bp Neighborhood of RT #1 [2953, 5529] RVT-DGRs Avd_like Feature: gene Location: 2953-3246 bp Feature: gene Location: 3445-3723 bp Feature: gene Location: 3686-5107 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4061-4763 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4061-4763 bp Feature: gene Location: 5122-5529 bp Feature: domain Description: Avd_like Location: 5155-5464 bp Feature: domain Description: Avd_like Location: 5 15 5 -5 464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: DEOY01000298.1 TPA_asm: Bacteroides sp. UBA3406 UBA3406_contig_9194, whole genome shotgun sequence (4518 bp)
Overview 1 RT 1: 89-3066 bp Neighborhood of RT #1 [89, 3066] RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 89-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-1178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356 -1178 bp Feature: domain Description: Intron_maturas2 Location: 1322-1607 bp Feature: domain Description: Intron_maturas2 Location: 1322-16 07 bp Feature: domain Description: HNHc Note: nucleases Location: 1733-1877 bp Feature: domain Description: HNHc Note: nucleases Location: 1733-1877 bp Feature: gene Location: 1870-2892 bp Feature: domain Description: TraG-D_C Location: 2248-2581 bp Feature: domain Description: TraG-D_C Location: 2248-2581 bp Feature: gene Location: 2896-3066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)