myRT

myRT report for GCA_002358575.1_ASM235857v1

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Seq: DEPD01000113.1 TPA_asm: Lachnospiraceae bacterium UBA3401 UBA3401_contig_1856, whole genome shotgun sequence (11658 bp)
Overview 1 RT 1: 8537-11520 bp Neighborhood of RT #1 [8537, 11657] NERD zf-C4_Topoisom RVT-Retrons PRK09328 Feature: gene Location: 8537-9421 bp Feature: domain Description: NERD Location: 8663-9008 bp Feature: domain Description: NERD Location: 8663-9008 bp Feature: domain Description: zf-C4_Topoisom Location: 9287-9407 bp Feature: domain Description: zf-C4_Topoisom Location: 9287-9407 bp Feature: gene Location: 9867-10043 bp Feature: gene Location: 10326-10793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10329-10710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0329-1 071 0 bp Feature: gene Location: 11160-11657 bp Feature: domain Description: PRK09328 Location: 11190-11520 bp Feature: domain Description: PRK09328 Location: 1 1 1 90-1 1 520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09328 (N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional), NERD (pfam08378), zf-C4_Topoisom (pfam01396)

Seq: DEPD01000027.1 TPA_asm: Lachnospiraceae bacterium UBA3401 UBA3401_contig_422, whole genome shotgun sequence (62597 bp)
Overview 1 RT 1: 19208-25195 bp Neighborhood of RT #1 [19208, 25221] pcrA pcrA RVT-GII GIIM TrmA Feature: gene Location: 19208-21793 bp Feature: domain Description: pcrA Location: 19223-21182 bp Feature: domain Description: pcrA Location: 192 2 3-2 1182 bp Feature: domain Description: pcrA Location: 21596-21779 bp Feature: domain Description: pcrA Location: 2 1596-2 1779 bp Feature: gene Location: 22329-22472 bp Feature: gene Location: 22599-23195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22605-22737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 605-2 2 737 bp Feature: domain Description: GIIM Note: maturase Location: 22860-23064 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 860-2 3064 bp Feature: gene Location: 23247-23630 bp Feature: gene Location: 23803-25221 bp Feature: domain Description: TrmA Location: 23812-25195 bp Feature: domain Description: TrmA Location: 2 3812 -2 5195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII, GIIM (pfam08388), TrmA (COG2265)